Oleg V. Kondrashov

Dr. Oleg V. Kondrashov

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Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 November 2014 in Nano Letters
Verified
Journal Article
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MEMatthias Eltschka
Matthias Eltschka
BJBerthold Jäck
Berthold Jäck
MAMaximilian Assig
Maximilian Assig
OKOleg V. Kondrashov
Oleg V. Kondrashov
MSMikhail A. Skvortsov
Mikhail A. Skvortsov
KKKlaus Kern
Klaus Kern

5 March 2020 in Scientific Reports
Verified
Journal Article
Open access
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KPKonstantin V. Pinigin
Konstantin V. Pinigin
OKOleg V. Kondrashov
Oleg V. Kondrashov
IJIrene Jiménez-Munguía
Irene Jiménez-Munguía
VAVeronika V. Alexandrova
Veronika V. Alexandrova
Oleg BatishchevOleg Batishchev
Oleg Batishchev
Sergey A. AkimovSergey A. Akimov
Sergey A. Akimov
Liquid-ordered lipid domains represent a lateral inhomogeneity in cellular membranes. These domains have elastic and physicochemical properties different from those of the surrounding membrane. In particular, their thickness exceeds that of the disordered membrane. Thus, elastic deformations arise at the domain boundary in order to compensate for the thickness mismatch. In equilibrium, the deformations lead to an incomplete register of monolayer ordered domains: the elastic energy is minimal if domains in opposing monolayers lie on the top of each other, and their boundaries are laterally shifted by about 3 nm. This configuration introduces a region, composed of one ordered and one disordered monolayers, with an intermediate bilayer thickness. Besides, a jump in a local monolayer curvature takes place in this intermediate region, concentrating here most of the elastic stress. This region can participate in a lateral sorting of membrane inclusions by offering them an optimal bilayer thickness and local curvature conditions. In the present study, we consider the sorting of deformable lipid inclusions, undeformable peripheral and deeply incorporated peptide inclusions, and undeformable transmembrane inclusions of different molecular geometry. With rare exceptions, all types of inclusions have an affinity to the ordered domain boundary as compared to the bulk phases. The optimal lateral distribution of inclusions allows relaxing the elastic stress at the boundary of domains.

1 August 2018 in Biophysical Journal
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Journal Article
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OKOleg V. Kondrashov
Oleg V. Kondrashov
TGTimur Galimzyanov
Timur Galimzyanov
KPKonstantin Vladimirovich Pavlov
Konstantin Vladimirovich Pavlov
EKElena A. Kotova
Elena A. Kotova
YAYuri N. Antonenko
Yuri N. Antonenko
Sergey A. AkimovSergey A. Akimov
Sergey A. Akimov

1 February 2019 in Physical Review E
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Journal Article
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OKOleg V. Kondrashov
Oleg V. Kondrashov
TGTimur R. Galimzyanov
Timur R. Galimzyanov
IJIrene Jiménez-Munguía
Irene Jiménez-Munguía
Oleg BatishchevOleg Batishchev
Oleg Batishchev
Sergey A. AkimovSergey A. Akimov
Sergey A. Akimov
Amphipathic alpha-helical peptides, among other peripheral components of plasma membranes, are promising antimicrobial agents. Partial incorporation of a peptide into a lipid monolayer causes elastic deformations. Deformations induced by two peptides distant from each other are independent; when peptides get closer, interference between the deformations causes effective lateral interaction. We quantified the energy of membrane deformations for arbitrary configuration of two amphipathic peptides on the membrane surface. The global minimum of the deformation energy proved to be achieved when two parallel peptides are in registry at the distance of about 6 nm between the axes of peptides. The energy calculated in the unidimensional approach provides a good approximation for the dependence of the energy of peptides being in the registered configuration upon the distance between them, valid for a broad range of peptide lengths. The effective interactional length of peptides for the unidimensional approach is close to their actual length. If two parallel peptides are shifted along their axes with respect to each other, the interaction energy is also well approximated by the unidimensional potential, within the projection of one peptide onto the other. In the case when the axes of alpha helices cross at a substantial angle, the main contribution to peptide interactions comes from their edges: the effective length of peptides for the unidimensional approach is almost equal to the characteristic length of decay of deformations. Based on the results we obtained it can be concluded that interaction of membrane inclusions is quite adequately described by the potential calculated in the unidimensional approach.

21 September 2015 in Applied Physics Letters
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Journal Article
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MEMatthias Eltschka
Matthias Eltschka
BJBerthold Jäck
Berthold Jäck
MAMaximilian Assig
Maximilian Assig
OKOleg V. Kondrashov
Oleg V. Kondrashov
MSMikhail A. Skvortsov
Mikhail A. Skvortsov
KKKlaus Kern
Klaus Kern
The properties of geometrically confined superconductors significantly differ from their bulk counterparts. Here, we demonstrate the geometrical impact for superconducting scanning tunneling microscopy (STM) tips, where the confinement ranges from the atomic to the mesoscopic scale. To this end, we compare the experimentally determined magnetic field dependence for several vanadium tips to microscopic calculations based on the Usadel equation. For our theoretical model of a superconducting cone, we find a direct correlation between the geometry and the order of the superconducting phase transition. Increasing the opening angle of the cone changes the phase transition from first to second order. Comparing our experimental findings to the theory reveals first and second order quantum phase transitions in the vanadium STM tips. In addition, the theory also explains experimentally observed broadening effects by the specific tip geometry.

22 October 2021 in Physical Review E
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Journal Article
Closed access
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OKOleg V. Kondrashov
Oleg V. Kondrashov
KPKonstantin V. Pinigin
Konstantin V. Pinigin
Sergey A. AkimovSergey A. Akimov
Sergey A. Akimov
Lipids and proteins of plasma membranes of eukaryotic cells are supposed to form protein-lipid domains, characterized by a different molecular order, bilayer thickness, and elastic parameters. Several mechanisms of preferable distribution of transmembrane proteins to the ordered or disordered membrane domains have been revealed. The mismatch between the length of the protein transmembrane domain and hydrophobic thickness of the lipid bilayer is considered to be an important driving force of protein lateral sorting. Utilizing the continuum theory of elasticity, we analyzed optimal configurations and preferable membrane domains for single-pass transmembrane peptides of various hydrophobic lengths and effective molecular shapes. We obtained that short transmembrane peptides stand perpendicularly to the membrane plane. The exceedance of a certain characteristic length leads to the tilt of the peptide. This length depends on the bilayer thickness. Thus, in the membrane with coexisting ordered (thicker) and disordered (thinner) phases tilting of the peptide in each phase is governed by its individual characteristic length. The lateral distribution of the peptides between ordered and disordered membrane domains is shown to be described by two additional characteristic lengths. The exceedance of the smaller one drives the peptide towards a more ordered and thicker membrane, while the exceedance of the larger characteristic length switches the preferable membrane domain from ordered and thicker to disordered and thinner. Thus, membrane proteins with long enough transmembrane domains are predicted to accumulate in the thinner disordered membrane as compared to the thicker ordered bilayer. For hourglass-like and barrel-like shaped transmembrane peptides the specific regime of sorting was obtained: the peptides distributed almost equally between the phases in a wide range of peptide lengths. This finding allowed explaining the experimental data on lateral distribution of transmembrane peptide tLAT.