Álvaro Soto

Dr. Álvaro Soto

GENFOR Grupo de Investigación en Genética y Fisiología Forestal, Universidad Politécnica de Madrid, 28040 Madrid, Spain
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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 February 2009 in Heredity
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Journal Article
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CBC Burgarella
C Burgarella
ZLZaida Lorenzo
Zaida Lorenzo
RJR Jabbour-Zahab
R Jabbour-Zahab
RLR Lumaret
R Lumaret
EGE Guichoux
E Guichoux
LGL Gil
L Gil

2 January 2008 in Molecular Biology and Evolution
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Journal Article
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EEEmmanuelle Eveno
Emmanuelle Eveno
CCCarmen Collada
Carmen Collada
MGMaría Ángeles Guevara
María Ángeles Guevara
VLValérie Léger
Valérie Léger
ÁSÁlvaro Soto
Álvaro Soto
PGPauline H. Garnier-Géré
Pauline H. Garnier-Géré
The importance of natural selection for shaping adaptive trait differentiation among natural populations of allogamous tree species has long been recognized. Determining the molecular basis of local adaptation remains largely unresolved, and the respective roles of selection and demography in shaping population structure are actively debated. Using a multilocus scan that aims to detect outliers from simulated neutral expectations, we analyzed patterns of nucleotide diversity and genetic differentiation at 11 polymorphic candidate genes for drought stress tolerance in phenotypically contrasted Pinus pinaster Ait. populations across its geographical range. We compared 3 coalescent-based methods: 2 frequentist-like, including 1 approach specifically developed for biallelic single nucleotide polymorphisms (SNPs) here and 1 Bayesian. Five genes showed outlier patterns that were robust across methods at the haplotype level for 2 of them. Two genes presented higher FST values than expected (PR-AGP4 and erd3), suggesting that they could have been affected by the action of diversifying selection among populations. In contrast, 3 genes presented lower FST values than expected (dhn-1, dhn2, and lp3-1), which could represent signatures of homogenizing selection among populations. A smaller proportion of outliers were detected at the SNP level suggesting the potential functional significance of particular combinations of sites in drought-response candidate genes. The Bayesian method appeared robust to low sample sizes, flexible to assumptions regarding migration rates, and powerful for detecting selection at the haplotype level, but the frequentist-like method adapted to SNPs was more efficient for the identification of outlier SNPs showing low differentiation. Population-specific effects estimated in the Bayesian method also revealed populations with lower immigration rates, which could have led to favorable situations for local adaptation. Outlier patterns are discussed in relation to the different genes' putative involvement in drought tolerance responses, from published results in transcriptomics and association mapping in P. pinaster and other related species. These genes clearly constitute relevant candidates for future association studies in P. pinaster.

1 March 2008 in Evolution
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GVGiovanni G. Vendramin
Giovanni G. Vendramin
BFBruno Fady
Bruno Fady
SGSantiago C. González-Martínez
Santiago C. González-Martínez
FHFeng Sheng Hu
Feng Sheng Hu
ISIvan Scotti
Ivan Scotti
RPRémy J. Petit
Rémy J. Petit

1 June 1999 in Plant Physiology
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Journal Article
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ÁSÁlvaro Soto
Álvaro Soto
IAIsabel Allona
Isabel Allona
CCCarmen Collada
Carmen Collada
MGMaría Ángeles Guevara
María Ángeles Guevara
RCRosa Casado
Rosa Casado
Luis GomezLuis Gomez
Luis Gomez
A small heat-shock protein (sHSP) that shows molecular chaperone activity in vitro was recently purified from mature chestnut (Castanea sativa) cotyledons. This protein, renamed here as CsHSP17.5, belongs to cytosolic class I, as revealed by cDNA sequencing and immunoelectron microscopy. Recombinant CsHSP17.5 was overexpressed in Escherichia coli to study its possible function under stress conditions. Upon transfer from 37°C to 50°C, a temperature known to cause cell autolysis, those cells that accumulated CsHSP17.5 showed improved viability compared with control cultures. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of cell lysates suggested that such a protective effect in vivo is due to the ability of recombinant sHSP to maintain soluble cytosolic proteins in their native conformation, with little substrate specificity. To test the recent hypothesis that sHSPs may be involved in protection against cold stress, we also studied the viability of recombinant cells at 4°C. Unlike the major heat-induced chaperone, GroEL/ES, the chestnut sHSP significantly enhanced cell survivability at this temperature. CsHSP17.5 thus represents an example of a HSP capable of protecting cells against both thermal extremes. Consistent with these findings, high-level induction of homologous transcripts was observed in vegetative tissues of chestnut plantlets exposed to either type of thermal stress but not salt stress.

26 October 2005 in Heredity
Verified
Journal Article
Closed access
MCMaría Valbuena Carabaña
María Valbuena Carabaña
SGS C González-Martínez
S C González-Martínez
VSV L Sork
V L Sork
CCC Collada
C Collada
ÁSÁlvaro Soto
Álvaro Soto
LGL Gil
L Gil

7 October 2005 in Theoretical and Applied Genetics
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Journal Article
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MGMaría Ángeles Guevara
María Ángeles Guevara
VSV. Storme
V. Storme
ÁSÁlvaro Soto
Álvaro Soto
BIB. Ivens
B. Ivens
MMM. Van Montagu
M. Van Montagu
WBW. Boerjan
W. Boerjan