Tom Ellis

Prof. Tom Ellis

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Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 January 2021 in Nature Materials
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CGCharlie Gilbert
Charlie Gilbert
TTTzu-Chieh Tang
Tzu-Chieh Tang
WOWolfgang Ott
Wolfgang Ott
BDBrandon A. Dorr
Brandon A. Dorr
WSWilliam M. Shaw
William M. Shaw
TETom Ellis
Tom Ellis

19 January 2011 in Integrative Biology
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Journal Article
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TETom Ellis
Tom Ellis
TATom Adie
Tom Adie
GBGeoff S. Baldwin
Geoff S. Baldwin
This paper critically reviews the multiple techniques and recent innovations in DNA assembly, a crucial part of synthetic biology.

1 October 2016 in Current Opinion in Microbiology
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Journal Article
Closed access
OBOlivier Borkowski
Olivier Borkowski
FCFrancesca Ceroni
Francesca Ceroni
GSGuy-Bart Stan
Guy-Bart Stan
TETom Ellis
Tom Ellis

31 May 2016 in Proceedings of the National Academy of Sciences
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Journal Article
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MFMichael Florea
Michael Florea
HHHenrik Hagemann
Henrik Hagemann
GSGabriella Santosa
Gabriella Santosa
JAJames Abbott
James Abbott
CMChris N. Micklem
Chris N. Micklem
TETom Ellis
Tom Ellis
Bacterial cellulose is a strong and ultrapure form of cellulose produced naturally by several species of the Acetobacteraceae. Its high strength, purity, and biocompatibility make it of great interest to materials science; however, precise control of its biosynthesis has remained a challenge for biotechnology. Here we isolate a strain of Komagataeibacter rhaeticus (K. rhaeticus iGEM) that can produce cellulose at high yields, grow in low-nitrogen conditions, and is highly resistant to toxic chemicals. We achieved external control over its bacterial cellulose production through development of a modular genetic toolkit that enables rational reprogramming of the cell. To further its use as an organism for biotechnology, we sequenced its genome and demonstrate genetic circuits that enable functionalization and patterning of heterologous gene expression within the cellulose matrix. This work lays the foundations for using genetic engineering to produce cellulose-based materials, with numerous applications in basic science, materials engineering, and biotechnology. Significance Bacterial cellulose is a remarkable material that is malleable, biocompatible, and over 10-times stronger than plant-based cellulose. It is currently used to create materials for tissue engineering, medicine, defense, electronics, acoustics, and fabrics. We describe here a bacterial strain that is readily amenable to genetic engineering and produces high quantities of bacterial cellulose in low-cost media. To reprogram this organism for biotechnology applications, we created a set of genetic tools that enables biosynthesis of patterned cellulose, functionalization of the cellulose surface with proteins, and tunable control over cellulose production. This greatly expands our ability to control and engineer new cellulose-based biomaterials, offering numerous applications for basic research, materials science, and biotechnology.

1 April 2019 in Cell
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Journal Article
Open access
WSWilliam M. Shaw
William M. Shaw
HYHitoshi Yamauchi
Hitoshi Yamauchi
JMJack Mead
Jack Mead
GGGlen-Oliver. F. Gowers
Glen-Oliver. F. Gowers
DBDavid J. Bell
David J. Bell
TETom Ellis
Tom Ellis
G protein-coupled receptor (GPCR) signaling is the primary method eukaryotes use to respond to specific cues in their environment. However, the relationship between stimulus and response for each GPCR is difficult to predict due to diversity in natural signal transduction architecture and expression. Using genome engineering in yeast, we constructed an insulated, modular GPCR signal transduction system to study how the response to stimuli can be predictably tuned using synthetic tools. We delineated the contributions of a minimal set of key components via computational and experimental refactoring, identifying simple design principles for rationally tuning the dose response. Using five different GPCRs, we demonstrate how this enables cells and consortia to be engineered to respond to desired concentrations of peptides, metabolites, and hormones relevant to human health. This work enables rational tuning of cell sensing while providing a framework to guide reprogramming of GPCR-based signaling in other systems.

14 October 2020 in Nature Communications
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FMFankang Meng
Fankang Meng
TETom Ellis
Tom Ellis
Synthetic biology is among the most hyped research topics this century, and in 2010 it entered its teenage years. But rather than these being a problematic time, we’ve seen synthetic biology blossom and deliver many new technologies and landmark achievements.