Over the past several years, plantings of California native plant nursery stock in restoration areas have become recognized as a pathway for invasive species introductions, in particular Phytophthora pathogens, including first in the U.S. detections (Phytophthora tentaculata, Phytophthora quercina), new taxa, new hybrid species, and dozens of other soilborne species. Restoration plantings may be conducted in high-value and limited habitats to sustain or re-establish rare plant populations. Once established, Phytophthora pathogens infest the site and are very difficult to eradicate or manage—they degrade the natural resources the plantings were intended to enhance. To respond to unintended Phytophthora introductions, vegetation ecologists took a variety of measures to prevent pathogen introduction and spread, including treating infested areas by solarization, suspending plantings, switching to direct seeding, applying stringent phytosanitation requirements on contracted nursery stock, and building their own nursery for clean plant production. These individual or collective actions, loosely coordinated by the Phytophthoras in Native Habitats Work Group ensued as demands intensified for protection from the inadvertent purchase of infected plants from commercial native plant nurseries. Regulation and management of the dozens of Phytophthora species and scores of plant hosts present a challenge to the state, county, and federal agriculture officials and to the ornamental and restoration nursery industries. To rebuild confidence in the health of restoration nursery stock and prevent further Phytophthora introductions, a voluntary, statewide accreditation pilot project is underway which, upon completion of validation, is planned for statewide implementation.

The genetic structure of a sample of isolates of the oomycete plant pathogen Phytophthora cinnamomi from natural and agricultural outbreaks and the long-distance movement of individual genotypes were studied using four microsatellite markers to genotype 159 isolates of Californian, Mexican, and worldwide origins. Allelic profiles identified 75 multilocus genotypes. A STRUCTURE analysis placed them in three groups characterized by different geographic and host ranges, different genic and genotypic diversity, and different reproductive modes. When relationships among genotypes were visualized on a minimum spanning network (MSN), genotypes belonging to the same STRUCTURE group were contiguous, with rare exceptions. A putatively ancestral group 1 had high genic diversity, included all A1 mating type isolates and all Papuan isolates in the sample, was rarely isolated from natural settings in California and Mexico, and was positioned at the center of the MSN. Putatively younger groups 2 and 3 had lower genic diversity, were both neighbors to group 1 but formed two distinct peripherical sectors of the MSN, and were equally present in agricultural commodities and natural settings in Mexico and California. A few genotypes, especially in groups 2 and 3, were isolated multiple times in different locations and settings. The presence of identical genotypes from the same hosts in different continents indicated that long-distance human-mediated movement of P. cinnamomi had occurred. The presence of identical genotypes at high frequencies in neighboring wildlands and agricultural settings suggest that specific commodities may have been the source of recent wild infestations caused by novel invasive genotypes.

Phytophthora tentaculata Kröber & Marwitz (Pythiaceae) has been detected in several native plant nurseries in 4 California counties and in restoration sites on orange sticky monkey flower (Diplacus aurantiacus (W. Curtis) Jeps. subsp. aurantiacus [Scrophulariaceae]), toyon (Heteromeles arbutifolia (Lindl.) M. Roem. [Rosaceae]), coffeeberry (Frangula californica (Eschsch.) A. Gray [Rhamnaceae]), and sage (Salvia spp. L. [Lamiaceae]). These findings are the first detections of P. tentaculata in the US and the first ever on these host plants. Phytophthora species are a known problem in horticultural nurseries, but little attention has been placed on native plant or restoration nurseries. The potential for plant pathogens to be outplanted along with native plant nursery stock is very high, posing a threat to neighboring forests.

Phytophthora is a long-established, well-known, and globally important genus of plant pathogens. Phylogenetic evidence has shown that the biologically distinct, obligate biotrophic downy mildews evolved from Phytophthora at least twice. Because, cladistically, this renders Phytophthora “paraphyletic,” it has been proposed that Phytophthora evolutionary clades be split into multiple genera ( Crous et al. 2021 ; Runge et al. 2011 ; Thines 2023 , 2024 ). In this letter, we review arguments for the retention of the generic name Phytophthora with a broad circumscription made by Brasier et al. (2022) and by many delegates at an open workshop organized by The American Phytopathological Society. We present our well-considered responses to the genus splitting proposals, both in general terms and in terms of the specific proposals for new genera, alongside new information regarding the biological properties and mode of origin of the Phytophthora clades. We consider that the proposals are mostly non-rigorous and not supported by the scientific evidence. Further, given (i) the apparent lack of any distinguishing biological characteristics (synapomorphies) between the Phytophthora clades; (ii) the fundamental monophyly of Phytophthora in the original Haeckelian sense ( Haeckel 1877 ); (iii) the fact that paraphyly is not a justification for taxonomic splitting; and (iv) the considerable likely damage to effective scientific communication and disease management from an unnecessary breakup of the genus, we report that workshop delegates voted unanimously in favor of preserving the current generic concept and for seeking endorsement of this view by a working group of the International Commission on the Taxonomy of Fungi. [ ] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Widespread Phytophthora infections have been discovered in nursery stock used in California restoration plantings. In response, Nursery Phytophthora Best Management Practices (NPBMPs) designed to exclude Phytophthora from nursery plants were developed to address the need for clean planting stock in restoration projects. A pilot program to implement the systematic use of the NPBMPs, Accreditation to Improve Restoration (AIR), was developed and started in 2018. As of 2020, 13 northern California restoration nurseries have been evaluated, and five have met all the program requirements. In 564 tests conducted over 4 years with a sensitive leachate baiting protocol, no Phytophthora was detected from over 20,000 nursery plants produced in compliance with the NPBMPs. In comparison, Phytophthora was detected in 25% of tests conducted on partially compliant stock and in 71% of tests from nurseries following few or no NPBMPs. The AIR pilot program has demonstrated that container stock free of detectable Phytophthora can be reliably produced by adhering to an integrated program of clean nursery production practices. To obtain Phytophthora-free plants for habitat restoration, informed clients were willing to pay increased costs required to produce NPBMP-compliant nursery stock.