Sonja Oberbeckmann

Dr. Sonja Oberbeckmann

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 October 2016 in Analytical and Bioanalytical Chemistry
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Journal Article
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AKAndrea Käppler
Andrea Käppler
DFDieter Fischer
Dieter Fischer
SOSonja Oberbeckmann
Sonja Oberbeckmann
Gerald SchernewskiGerald Schernewski
Gerald Schernewski
MLMatthias Labrenz
Matthias Labrenz
BVBrigitte Voit
Brigitte Voit

3 August 2016 in PLOS ONE
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Journal Article
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SOSonja Oberbeckmann
Sonja Oberbeckmann
AOA Mark Osborn
A Mark Osborn
MDMelissa B Duhaime
Melissa B Duhaime
Plastic debris pervades in our oceans and freshwater systems and the potential ecosystem-level impacts of this anthropogenic litter require urgent evaluation. Microbes readily colonize aquatic plastic debris and members of these biofilm communities are speculated to include pathogenic, toxic, invasive or plastic degrading-species. The influence of plastic-colonizing microorganisms on the fate of plastic debris is largely unknown, as is the role of plastic in selecting for unique microbial communities. This work aimed to characterize microbial biofilm communities colonizing single-use poly(ethylene terephthalate) (PET) drinking bottles, determine their plastic-specificity in contrast with seawater and glass-colonizing communities, and identify seasonal and geographical influences on the communities. A substrate recruitment experiment was established in which PET bottles were deployed for 5–6 weeks at three stations in the North Sea in three different seasons. The structure and composition of the PET-colonizing bacterial/archaeal and eukaryotic communities varied with season and station. Abundant PET-colonizing taxa belonged to the phylum Bacteroidetes (e.g. Flavobacteriaceae, Cryomorphaceae, Saprospiraceae—all known to degrade complex carbon substrates) and diatoms (e.g. Coscinodiscophytina, Bacillariophytina). The PET-colonizing microbial communities differed significantly from free-living communities, but from particle-associated (>3 μm) communities or those inhabiting glass substrates. These data suggest that microbial community assembly on plastics is driven by conventional marine biofilm processes, with the plastic surface serving as raft for attachment, rather than selecting for recruitment of plastic-specific microbial colonizers. A small proportion of taxa, notably, members of the Cryomorphaceae and Alcanivoraceae, were significantly discriminant of PET but not glass surfaces, conjuring the possibility that these groups may directly interact with the PET substrate. Future research is required to investigate microscale functional interactions at the plastic surface.

19 January 2018 in Frontiers in Microbiology
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SOSonja Oberbeckmann
Sonja Oberbeckmann
BKBernd Kreikemeyer
Bernd Kreikemeyer
MLMatthias Labrenz
Matthias Labrenz
While the global distribution of microplastics (MP) in the marine environment is currently being critically evaluated, the potential role of MP as a vector for distinct microbial assemblages or even pathogenic bacteria is hardly understood. To gain a deeper understanding, we investigated how different in situ conditions contribute to the composition and specificity of MP-associated bacterial communities in relation to communities on natural particles. Polystyrene (PS), polyethylene (PE), and wooden pellets were incubated for 2 weeks along an environmental gradient, ranging from marine (coastal Baltic Sea) to freshwater (waste water treatment plant, WWTP) conditions. The associated assemblages as well as the water communities were investigated applying high-throughput 16S rRNA gene sequencing. Our setup allowed for the first time to determine MP-dependent and -independent assemblage factors as subject to different environmental conditions in one system. Most importantly, plastic-specific assemblages were found to develop solely under certain conditions, such as lower nutrient concentration and higher salinity, while the bacterial genus Erythrobacter, known for the ability to utilize polycyclic aromatic hydrocarbons (PAH), was found specifically on MP across a broader section of the gradient. We discovered no enrichment of potential pathogens on PE or PS; however, the abundant colonization of MP in a WWTP by certain bacteria commonly associated with antibiotic resistance suggests MP as a possible hotspot for horizontal gene transfer. Taken together, our study clarifies that the surrounding environment prevailingly shapes the biofilm communities, but that MP-specific assemblage factors exist. These findings point to the ecological significance of specific MP-promoted bacterial populations in aquatic environments and particularly in plastic accumulation zones.

1 November 2014 in FEMS Microbiology Ecology
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Journal Article
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SOSonja Oberbeckmann
Sonja Oberbeckmann
MLMartin G.J. Loeder
Martin G.J. Loeder
GGGunnar Gerdts
Gunnar Gerdts
AOA. Mark Osborn
A. Mark Osborn
Plastic pollution is now recognised as a major threat to marine environments and marine biota. Recent research highlights that diverse microbial spec

17 September 2015 in Environmental Chemistry
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SOSonja Oberbeckmann
Sonja Oberbeckmann
MLMartin G. J. Löder
Martin G. J. Löder
MLMatthias Labrenz
Matthias Labrenz
Environmental context: Marine microbial communities, which play a crucial role in all biogeochemical processes in the oceans, could be affected by microplastic pollution. Research is necessary to understand the interactions between marine microbial communities and microplastics, and to explore the potential for microplastics to serve as transport systems for pathogenic microorganisms. Our review summarises first insights into these topics and discusses gaps in our current knowledge. The accumulation of plastic in the marine environment is a long-known issue, but the potential relevance of this pollution for the ocean has been recognised only recently. Within this context, microplastic fragments (<5 mm) represent an emerging topic. Owing to their small size, they are readily ingested by marine wildlife and can accumulate in the food web, along with associated toxins and microorganisms colonising the plastic. We are starting to understand that plastic biofilms are diverse and are, comparably with non-plastic biofilms, driven by a complex network of influences, mainly spatial and seasonal factors, but also polymer type, texture and size of the substratum. Within this context, we should raise the question about the potential of plastic particles to serve as vectors for harmful microorganisms. The main focus of the review is the discussion of first insights and research gaps related to microplastic-associated microbial biofilm communities.

16 June 2018 in Analytical and Bioanalytical Chemistry
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Journal Article
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AKAndrea Käppler
Andrea Käppler
MFMarten Fischer
Marten Fischer
BSBarbara M. Scholz-Böttcher
Barbara M. Scholz-Böttcher
SOSonja Oberbeckmann
Sonja Oberbeckmann
MLMatthias Labrenz
Matthias Labrenz
BVBrigitte Voit
Brigitte Voit