Polymer Electrolyte Fuel Cells (PEFCs) are one of the most promising power generation systems. The main component of a PEFC is the proton exchange membrane (PEM), object of intense research to improve the efficiency of the cell. The most commonly and commercially successful used PEMs are Nafion™ perfluorosulfonic acid (PFSA) membranes, taken as a reference for the development of innovative and alternative membranes. Usually, these membranes undergo different pre-treatments to enhance their characteristics. With the aim of understanding the utility and the effects of such pre-treatments, in this study, a commercial Nafion™ NR212 membrane was subjected to two different chemical pre-treatments, before usage. HNO₃ or H₂O₂ were selected as chemical agents because the most widely used ones in the procedure protocols in order to prepare the membrane in a well-defined reference state. The pre-treated membranes properties were compared to an untreated membrane, used as-received. The investigation has showed that the pre-treatments enhance the hydrophilicity and increase the water molecules coordinated to the sulphonic groups in the membrane structure, on the other hand the swelling of the membranes also increases. As a consequence, the untreated membrane shows a better mechanical resistance, a good electrochemical performance and durability in fuel cell operations, orienting toward the use of the NR212 membrane without any chemical pre-treatment.