Interpretation of remote sensing reflectance from coastal waters at different wavelengths of light yields valuable information about water column constituents, which in turn, gives information on a variety of processes occurring in coastal waters, such as primary production, biogeochemical cycles, sediment transport, coastal erosion, and harmful algal blooms. The Hyperspectral Infrared Imager (HyspIRI) is well suited to produce global, seasonal maps and specialized observations of coastal ecosystems and to improve our understanding of how phytoplankton communities are spatially distributed and structured, and how they function in coastal and inland waters. This paper draws from previously published studies on high-resolution, hyperspectral remote sensing of coastal and inland waters and provides an overview of how the HyspIRI mission could enable the retrieval of new aquatic biophysical products or improve the retrieval accuracy of existing satellite-derived products (e.g., inherent optical properties, phytoplankton functional types, pigment composition, chlorophyll-a concentration, etc.). The intent of this paper is to introduce the development of the HyspIRI mission to the coastal and inland remote sensing community and to provide information regarding several potential data products that were not originally part of the HyspIRI mission objectives but could be applicable to research related to coastal and inland waters. Further work toward quantitatively determining the extent and quality of these products, given the instrument and mission characteristics, is recommended.

Light availability is an important factor driving primary productivity in benthic ecosystems, but in situ and remote sensing measurements of light quality are limited for coral reefs and seagrass beds. We evaluated the productivity responses of a patch reef and a seagrass site in the Lower Florida Keys to ambient light availability and spectral quality. In situ optical properties were characterized utilizing moored and water column bio-optical and hydrographic measurements. Net ecosystem productivity (NEP) was also estimated for these study sites using benthic productivity chambers. Our results show higher spectral light attenuation and absorption, and lower irradiance during low tide in the patch reef, tracking the influx of materials from shallower coastal areas. In contrast, the intrusion of clearer surface Atlantic Ocean water caused lower values of spectral attenuation and absorption, and higher irradiance in the patch reef during high tide. Storms during the studied period, with winds >10 m·s⁻¹, caused higher spectral attenuation values. A spatial gradient of NEP was observed, from high productivity in the shallow seagrass area, to lower productivity in deeper patch reefs. The highest daytime NEP was observed in the seagrass, with values of almost 0.4 g·O₂·m⁻²·h⁻¹. Productivity at the patch reef area was lower in May than during October 2012 (mean = 0.137 and 0.177 g·O₂·m⁻²·h⁻¹, respectively). Higher photosynthetic active radiation (PAR) levels measured above water and lower light attenuation in the red region of the visible spectrum (~666 to ~699 nm) had a positive correlation with NEP. Our results indicate that changes in light availability and quality by suspended or resuspended particles limit benthic productivity in the Florida Keys.