Bryan John Subong

Dr. Bryan John Subong

The University of Tokyo
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2016 in Lipid Insights
Verified
Journal Article
Open access
VPVinay R. Patel
Vinay R. Patel
GDGerard G. Dumancas
Gerard G. Dumancas
LVLakshmi Chockalingam Kasi Viswanath
Lakshmi Chockalingam Kasi Viswanath
RMRandall Maples
Randall Maples
BSBryan John Subong
Bryan John Subong
Castor oil, produced from castor beans, has long been considered to be of important commercial value primarily for the manufacturing of soaps, lubricants, and coatings, among others. Global castor oil production is concentrated primarily in a small geographic region of Gujarat in Western India. This region is favorable due to its labor-intensive cultivation method and subtropical climate conditions. Entrepreneurs and castor processors in the United States and South America also cultivate castor beans but are faced with the challenge of achieving high castor oil production efficiency, as well as obtaining the desired oil quality. In this manuscript, we provide a detailed analysis of novel processing methods involved in castor oil production. We discuss novel processing methods by explaining specific processing parameters involved in castor oil production.

23 December 2020 in Toxins
Verified
Journal Article
Open access
PDF file
BSBryan John Subong
Bryan John Subong
ALArturo O. Lluisma
Arturo O. Lluisma
Rhodora Verzo AzanzaRhodora Verzo Azanza
Rhodora Verzo Azanza
LSLilibeth Salvador-Reyes
Lilibeth Salvador-Reyes
Alexandrium minutum and Alexandrium tamutum are two closely related harmful algal bloom (HAB)-causing species with different toxicity. Using isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics and two-dimensional differential gel electrophoresis (2D-DIGE), a comprehensive characterization of the proteomes of A. minutum and A. tamutum was performed to identify the cellular and molecular underpinnings for the dissimilarity between these two species. A total of 1436 proteins and 420 protein spots were identified using iTRAQ-based proteomics and 2D-DIGE, respectively. Both methods revealed little difference (10–12%) between the proteomes of A. minutum and A. tamutum, highlighting that these organisms follow similar cellular and biological processes at the exponential stage. Toxin biosynthetic enzymes were present in both organisms. However, the gonyautoxin-producing A. minutum showed higher levels of osmotic growth proteins, Zn-dependent alcohol dehydrogenase and type-I polyketide synthase compared to the non-toxic A. tamutum. Further, A. tamutum had increased S-adenosylmethionine transferase that may potentially have a negative feedback mechanism to toxin biosynthesis. The complementary proteomics approach provided insights into the biochemistry of these two closely related HAB-causing organisms. The identified proteins are potential biomarkers for organismal toxicity and could be explored for environmental monitoring.

30 May 2025 in COVID
Verified
Journal Article
Open access
PDF file
BSBryan John Subong
Bryan John Subong
IFImelda Lucagbo Forteza
Imelda Lucagbo Forteza
The replication machinery of SARS-CoV-2 is a primary target for therapeutic intervention, and has led to significant progress in antiviral medication discovery. This review consolidates contemporary molecular insights into viral replication and rigorously assesses treatment methods at different phases of viruses’ clinical development. Direct-acting antivirals, such as nucleoside analogs (e.g., remdesivir, molnupiravir) and protease inhibitors (e.g., nirmatrelvir), have shown clinical effectiveness in diminishing morbidity and hospitalization rates. Simultaneously, host-targeted medicines like baricitinib, camostat, and brequinar leverage critical host–virus interactions, providing additional pathways to reduce viral replication while possibly minimizing the development of resistance. Notwithstanding these advancements, constraints in distribution methods, antiviral longevity, and the risk of mutational evasion demand novel strategies. Promising investigational approaches encompass CRISPR-mediated RNA degradation systems, inhalable siRNA-nanoparticle conjugates, and molecular glue degraders that target host and viral proteins. Furthermore, next-generation treatments aimed at underutilized enzyme domains (e.g., NiRAN, ExoN) and host chaperone systems (e.g., TRiC complex) signify a transformative approach in antiviral targeting. The integration of high-throughput phenotypic screening, AI-driven medication repurposing, and systems virology is transforming the antiviral discovery field. An ongoing interdisciplinary endeavor is necessary to convert these findings into versatile, resistance-resistant antiviral strategies that are applicable beyond the present pandemic and in future coronavirus epidemics.

Verified
Journal Article
Open access
PDF file
BSBryan John Subong
Bryan John Subong
Takeaki OzawaTakeaki Ozawa
Takeaki Ozawa
The nonstructural proteins 7 and 8 (nsp7 and nsp8) of SARS-CoV-2 are highly important proteins involved in the RNA-dependent polymerase (RdRp) protein replication complex. In this study, we analyzed the global mutation of nsp7 and nsp8 in 2022 and 2023 and analyzed the effects of mutation on the viral replication protein complex using bio-chemoinformatics. Frequently occurring variants are found to be single amino acid mutations for both nsp7 and nsp8. The most frequently occurring mutations for nsp7 which include L56F, L71F, S25L, M3I, D77N, V33I and T83I are predicted to cause destabilizing effects, whereas those in nsp8 are predicted to cause stabilizing effects, with the threonine to isoleucine mutation (T89I, T145I, T123I, T148I, T187I) being a frequent mutation. A conserved domain database analysis generated critical interaction residues for nsp7 (Lys-7, His-36 and Asn-37) and nsp8 (Lys-58, Pro-183 and Arg-190), which, according to thermodynamic calculations, are prone to destabilization. Trp-29, Phe-49 of nsp7 and Trp-154, Tyr-135 and Phe-15 of nsp8 cause greater destabilizing effects to the protein complex based on a computational alanine scan suggesting them as possible new target sites. This study provides an intensive analysis of the mutations of nsp7 and nsp8 and their possible implications for viral complex stability.

1 January 2017
Verified
Book Chapter
Closed access
GDGerard G. Dumancas
Gerard G. Dumancas
GBGhalib Bello
Ghalib Bello
SSSamantha Sevilleno
Samantha Sevilleno
BSBryan John Subong
Bryan John Subong
RKRangika Hikkaduwa Koralege
Rangika Hikkaduwa Koralege
AGAmanda Goudelock
Amanda Goudelock

24 April 2025 in Preprints.org
Verified
Preprint
Open access
PDF file
BSBryan John Subong
Bryan John Subong
IFImelda Lucagbo Forteza
Imelda Lucagbo Forteza
SARS-CoV-2 replication remains a critical and main target for therapeutic interventions. The current review synthesizes existing knowledge to provide an in-depth analysis of molecular insights and both current and emerging therapy methods, moving past reviews centered on antivirals and general replication processes. We examined antiviral tactics aimed at these replication pathways, including direct-acting nucleoside analogs (remdesivir, molnupiravir), protease inhibitors (nirmatrelvir), and host-directed agents influencing viral entry and RNA synthesis. Emphasizing therapeutic constraints and evolutionary escape, this study also investigates synergistic drug combinations and resistance mechanisms. Discussed for their capacity to efficiently handle next coronavirus dangers are emerging methods—from CRISPR-based gene-silencing, nanoparticle-delivered siRNAs, and AI-driven drug discovery. Highlighted as new antiviral targets are host-pathogen interactions including adaptation via the TRiC complex and phosphatase pathways. This paper offers a road map for improving therapeutic tactics against SARS-CoV-2 and related developing viruses with molecular virology, pharmacology, and computational biology.