Lisa Van den Broeck

Dr. Lisa Van den Broeck

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 April 2018 in Trends in Plant Science
Verified
Journal Article
Open access
MDMarieke Dubois
Marieke Dubois
LBLisa Van den Broeck
Lisa Van den Broeck
DIDirk Inzé
Dirk Inzé
Being continuously exposed to variable environmental conditions, plants produce phytohormones to react quickly and specifically to these changes. The phytohormone ethylene is produced in response to multiple stresses. While the role of ethylene in defense responses to pathogens is widely recognized, recent studies in arabidopsis and crop species highlight an emerging key role for ethylene in the regulation of organ growth and yield under abiotic stress. Molecular connections between ethylene and growth-regulatory pathways have been uncovered, and altering the expression of ethylene response factors (ERFs) provides a new strategy for targeted ethylene-response engineering. Crops with optimized ethylene responses show improved growth in the field, opening new windows for future crop improvement. This review focuses on how ethylene regulates shoot growth, with an emphasis on leaves.

18 December 2020 in Soil Systems
Verified
Journal Article
Open access
PDF file
SDSarah Doydora
Sarah Doydora
LGLuciano C Colpo Gatiboni
Luciano C Colpo Gatiboni
KGKhara Grieger
Khara Grieger
DHDean Hesterberg
Dean Hesterberg
JJJacob L. Jones
Jacob L. Jones
ODOwen Duckworth
Owen Duckworth
Repeated applications of phosphorus (P) fertilizers result in the buildup of P in soil (commonly known as legacy P), a large fraction of which is not immediately available for plant use. Long-term applications and accumulations of soil P is an inefficient use of dwindling P supplies and can result in nutrient runoff, often leading to eutrophication of water bodies. Although soil legacy P is problematic in some regards, it conversely may serve as a source of P for crop use and could potentially decrease dependence on external P fertilizer inputs. This paper reviews the (1) current knowledge on the occurrence and bioaccessibility of different chemical forms of P in soil, (2) legacy P transformations with mineral and organic fertilizer applications in relation to their potential bioaccessibility, and (3) approaches and associated challenges for accessing native soil P that could be used to harness soil legacy P for crop production. We highlight how the occurrence and potential bioaccessibility of different forms of soil inorganic and organic P vary depending on soil properties, such as soil pH and organic matter content. We also found that accumulation of inorganic legacy P forms changes more than organic P species with fertilizer applications and cessations. We also discuss progress and challenges with current approaches for accessing native soil P that could be used for accessing legacy P, including natural and genetically modified plant-based strategies, the use of P-solubilizing microorganisms, and immobilized organic P-hydrolyzing enzymes. It is foreseeable that accessing legacy P will require multidisciplinary approaches to address these limitations.

7 October 2016 in Plant, Cell & Environment
Verified
Journal Article
Open access
PDF file
MDMarieke Dubois
Marieke Dubois
HCHannes Claeys
Hannes Claeys
LBLisa Van den Broeck
Lisa Van den Broeck
DIDirk Inzé
Dirk Inzé
Drought stress is a major problem for agriculture worldwide, causing significant yield losses. Plants have developed highly flexible mechanisms to deal with drought, including organ‐ and developmental stage‐specific responses. In young leaves, growth is repressed as an active mechanism to save water and energy, increasing the chances of survival but decreasing yield. Despite its importance, the molecular basis for this growth inhibition is largely unknown. Here, we present a novel approach to explore early molecular mechanisms controlling Arabidopsis leaf growth inhibition following mild drought. We found that growth and transcriptome responses to drought are highly dynamic. Growth was only repressed by drought during the day, and our evidence suggests that this may be due to gating by the circadian clock. Similarly, time of day strongly affected the extent, specificity, and in certain cases even direction of drought‐induced changes in gene expression. These findings underscore the importance of taking into account diurnal patterns to understand stress responses, as only a small core of drought‐responsive genes are affected by drought at all times of the day. Finally, we leveraged our high‐resolution data to demonstrate that phenotypic and transcriptome responses can be matched to identify putative novel regulators of growth under mild drought.

20 May 2015 in Plant Physiology
Verified
Journal Article
Open access
PDF file
MDMarieke Dubois
Marieke Dubois
LBLisa Van den Broeck
Lisa Van den Broeck
HCHannes Claeys
Hannes Claeys
KVKaatje Van Vlierberghe
Kaatje Van Vlierberghe
MMMinami Matsui
Minami Matsui
DIDirk Inzé
Dirk Inzé
Leaf growth is a tightly regulated and complex process, which responds in a dynamic manner to changing environmental conditions, but the mechanisms that reduce growth under adverse conditions are rather poorly understood. We previously identified a growth inhibitory pathway regulating leaf growth upon exposure to a low concentration of mannitol and characterized the ETHYLENE RESPONSE FACTOR (ERF)/APETALA2 transcription factor ERF6 as a central activator of both leaf growth inhibition and induction of stress tolerance genes. Here, we describe the role of the transcriptional repressor ERF11 in relation to the ERF6-mediated stress response in Arabidopsis (Arabidopsis thaliana). Using inducible overexpression lines, we show that ERF6 induces the expression of ERF11. ERF11 in turn molecularly counteracts the action of ERF6 and represses at least some of the ERF6-induced genes by directly competing for the target gene promoters. As a phenotypical consequence of the ERF6-ERF11 antagonism, the extreme dwarfism caused by ERF6 overexpression is suppressed by overexpression of ERF11. Together, our data demonstrate that dynamic mechanisms exist to fine-tune the stress response and that ERF11 counteracts ERF6 to maintain a balance between plant growth and stress defense.

1 December 2017 in Molecular Systems Biology
Verified
Journal Article
Open access
PDF file
LBLisa Van den Broeck
Lisa Van den Broeck
MDMarieke Dubois
Marieke Dubois
MVMattias Vermeersch
Mattias Vermeersch
VSVeronique Storme
Veronique Storme
MMMinami Matsui
Minami Matsui
DIDirk Inzé
Dirk Inzé
Plants have established different mechanisms to cope with environmental fluctuations and accordingly fine‐tune their growth and development through the regulation of complex molecular networks. It is largely unknown how the network architectures change and what the key regulators in stress responses and plant growth are. Here, we investigated a complex, highly interconnected network of 20 Arabidopsis transcription factors (TFs) at the basis of leaf growth inhibition upon mild osmotic stress. We tracked the dynamic behavior of the stress‐responsive TFs over time, showing the rapid induction following stress treatment, specifically in growing leaves. The connections between the TFs were uncovered using inducible overexpression lines and were validated with transient expression assays. This study resulted in the identification of a core network, composed of ERF6, ERF8, ERF9, ERF59, and ERF98, which is responsible for most transcriptional connections. The analyses highlight the biological function of this core network in environmental adaptation and its redundancy. Finally, a phenotypic analysis of loss‐of‐function and gain‐of‐function lines of the transcription factors established multiple connections between the stress‐responsive network and leaf growth. Synopsis This study unravels a transcriptional network controlling Arabidopsis leaf growth inhibition in response to osmotic stress. The network consists of 20 transcription factors, whose complex and redundant patterns of interconnections enable robust adaptation to environmental changes. Linear pathways are a simplification. Multiple transcription factors can regulate the same target genes and, in some cases more than one transcription factor is necessary to induce the expression of a target gene. The network is robust because regulatory redundancy is built in, making the network less susceptible to mutations. ERF6 and ERF98 are both induced in the first induction group and can transcriptionally activate a large part of the network. They have an overlap of 6 target genes. ERF8 and ERF9 are both induced in the third induction group and can transcriptionally repress a large part of the network, showing an overlap of 9 target genes. The network is efficient for environmental adaption to a stress signal. The repressing activities in the network after 2 h of stress enables the network to return to its prestimulus state. The network is highly responsive to a range of input signals and might be part of a general stress response. However, the need for two transcription factors to transactivate target genes prevents stochastic activation of the network. The random induction of the network would lead to a needless stress response which is disadvantageous for the plant.

18 July 2016 in Journal of Experimental Botany
Verified
Journal Article
Open access
PDF file
EMEvan Murphy
Evan Murphy
LVLam Dai Vu
Lam Dai Vu
LBLisa Van den Broeck
Lisa Van den Broeck
ZLZhefeng Lin
Zhefeng Lin
PRPriya Ramakrishna
Priya Ramakrishna
Ive De SmetIve De Smet
Ive De Smet
In plants, many signalling molecules, such as phytohormones, miRNAs, transcription factors, and small signalling peptides, drive growth and development. However, very few small signalling peptides have been shown to be necessary for lateral root development. Here, we describe the role of the peptide RALFL34 during early events in lateral root development, and demonstrate its specific importance in orchestrating formative cell divisions in the pericycle. Our results further suggest that this small signalling peptide acts on the transcriptional cascade leading to a new lateral root upstream of GATA23, an important player in lateral root formation. In addition, we describe a role for ETHYLENE RESPONSE FACTORs (ERFs) in regulating RALFL34 expression. Taken together, we put forward RALFL34 as a new, important player in lateral root initiation.