Fertilization influences the soil microbiome. However, little is known about the effects of long-term fertilization on soil microbial metabolic pathways. In this study, we investigated the soil microbiome composition and function and microbial participation in the N cycle according to the Kyoto Encyclopedia of Genes and Genomes (KEGG) and gene ontology (GO) functional annotation of different genes in a metagenomic analysis after long-term fertilization. Fertilizer application significantly changed the soil C/N ratio. Chemical fertilizer (NPK) treatment decreased soil pH, and chemical fertilizer combined with straw (NPK+S0.5) treatment increased ammonium nitrogen (NH₄⁺-N) but decreased nitrate nitrogen (NO₃⁻-N). NPK, NPK+S0.5 and S0.5 applications did not change the soil microbiome composition or dominant phylum but changed the relative abundances of microbiome components. Moreover, fertilizer significantly influenced metabolic processes, cellular processes and single-organism processes. Compared with a no-fertilizer treatment (CK), the NPK treatment resulted in more differentially expressed gene (DEG) pathways than the NPK+S0.5 and S0.5 treatments, and these pathways significantly correlated with soil nitrate nitrogen (NO₃⁻-N), available phosphorus (AP) and the moisture content of soil (MC). KEGG analysis found that fertilizer application mainly affected the ribosome, photosynthesis and oxidative phosphorylation pathways. S0.5 and NPK+S0.5 increased microbial nitrogen fixation, and NPK and NPK+S0.5 decreased amoA and amoB and accelerated denitrification. Thus, organic fertilizer increased N fixation and nitrification, and inorganic N fertilizer accelerated denitrification. We found that the function of the soil microbiome under different fertilizer applications could be important for the rational application of fertilizer and for environmental and sustainable development.

Previous research has shown the varied effect of earthworms on soil carbon dynamics. We carried out a 180-day incubation experiment with earthworms and maize residue additions under conventional tillage (CT) and no tillage (NT) system conditions to quantify the earthworm effect in the black soil of northeastern China. Earthworms did not affect soil CO₂ emissions, while residue addition significantly increased such emissions. The effects of earthworms on dissolved organic carbon (DOC) and microbial biomass carbon (MBC) gradually weakened with time in CT with and without residue addition, but gradually increased with time in NT with residue addition. In the CT system, earthworms accelerated the soil organic carbon (SOC) mineralization; and the newly added residue decomposed into SOC. In the NT system, earthworms accelerated the decomposition of native residues increasing the SOC content; this increase in decomposition rates by earthworms was greater than the inhibitory effect imposed by the addition of the new residue. Earthworms and residues combine to play a single role in CT and NT. This result will help in the understanding of the role of earthworms and residue in SOC dynamics, and in the development of management strategies to improve SOC.