Dominik Refardt

Dr. Dominik Refardt

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Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 December 2015 in Environmental Science & Technology
Verified
Journal Article
Open access
AAAntonius Armanious
Antonius Armanious
Meret AeppliMeret Aeppli
Meret Aeppli
RJRonald Jacak
Ronald Jacak
DRDominik Refardt
Dominik Refardt
TSThérèse Sigstam
Thérèse Sigstam
MSMichael Sander
Michael Sander
Adsorption to solid–water interfaces is a major process governing the fate of waterborne viruses in natural and engineered systems. The relative contributions of different interaction forces to adsorption and their dependence on the physicochemical properties of the viruses remain, however, only poorly understood. Herein, we systematically studied the adsorption of four bacteriophages (MS2, fr, GA, and Qβ) to five model surfaces with varying surface chemistries and to three dissolved organic matter adlayers, as a function of solution pH and ionic strength, using quartz crystal microbalance with dissipation monitoring. The viruses were selected to have similar sizes and shapes but different surface charges, polarities, and topographies, as identified by modeling the distributions of amino acids in the virus capsids. Virus-sorbent interactions were governed by long-ranged electrostatics and favorable contributions from the hydrophobic effect, and shorter-ranged van der Waals interactions were of secondary importance. Steric effects depended on the topographic irregularities on both the virus and sorbent surfaces. Differences in the adsorption characteristics of the tested viruses were successfully linked to differences in their capsid surface properties. Besides identifying the major interaction forces, this work highlights the potential of computable virus surface charge and polarity descriptors to predict virus adsorption to solid–water interfaces.

13 October 2014 in Proceedings of the National Academy of Sciences
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Journal Article
Closed access
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KHKaren L. Haag
Karen L. Haag
TJTimothy Y. James
Timothy Y. James
JPJean-François Pombert
Jean-François Pombert
RLRonny Larsson
Ronny Larsson
TSTobias M. M. Schaer
Tobias M. M. Schaer
DEDieter Ebert
Dieter Ebert
Significance: Intracellular obligate parasitism results in extreme adaptations, whose evolutionary history is difficult to understand, because intermediate forms are hardly ever found. Microsporidia are highly derived intracellular parasites that are related to fungi. We describe the evolutionary history of a new microsporidian parasite found in the hindgut epithelium of the crustacean Daphnia and conclude that the new species has retained ancestral features that were lost in other microsporidia, whose hallmarks are the evolution of a unique infection apparatus, extreme genome reduction, and loss of mitochondrial respiration. The first evolutionary steps leading to the extreme metabolic and genomic simplification of microsporidia involved the adoption of a parasitic lifestyle, the development of a specialized infection apparatus, and the loss of diverse regulatory proteins.

17 March 2011 in The ISME Journal
Verified
Journal Article
Closed access
DRDominik Refardt
Dominik Refardt
Within-host competition between parasites is frequently invoked as a major force for parasite evolution, yet quantitative studies on its extent in an organismal group are lacking. Temperate bacteriophages are diverse and abundant parasites of bacteria, distinguished by their ability to enter a facultative dormant state in their host. Bacteria can accumulate multiple phages that may eventually abandon dormancy in response to host stress. Host resources are then converted into phage particles, whose release requires cell death. To study within-host competition between phages, I used the bacterium Escherichia coli and 11 lambdoid phages to construct single and double lysogens. Lysogenic bacterial cultures were then induced and time to host cell lysis and productivity of phages was measured. In double lysogens, this revealed strong competitive interactions as in all cases productivity of at least one phage declined. The outcome of within-host competition was often asymmetrical, and phages were found to vary hierarchically in within-host competitive ability. In double infections, the phage with the shorter lysis time determined the timing of cell lysis, which was associated with a competitive advantage when time differences were large. The results emphasize that within-host competition greatly affects phage fitness and that multiple infections should be considered an integral part of bacteriophage ecology.

1 October 2019 in Ecological Engineering
Verified
Journal Article
Closed access
YTYaiza Tejido-Nuñez
Yaiza Tejido-Nuñez
EAEnrique Aymerich
Enrique Aymerich
LSLuis Sancho
Luis Sancho
DRDominik Refardt
Dominik Refardt

1 July 2017 in Algal Research
Verified
Journal Article
Closed access
EDEya Damergi
Eya Damergi
JSJean-Paul Schwitzguébel
Jean-Paul Schwitzguébel
DRDominik Refardt
Dominik Refardt
SSShivom Sharma
Shivom Sharma
Christof HolligerChristof Holliger
Christof Holliger
CLChristian Ludwig
Christian Ludwig

8 January 2018 in Nature Ecology & Evolution
Verified
Journal Article
Closed access
MPMaroš Pleška
Maroš Pleška
MLMoritz Lang
Moritz Lang
DRDominik Refardt
Dominik Refardt
BLBruce R. Levin
Bruce R. Levin
CGCălin C. Guet
Călin C. Guet