Dominik Drabik

Dr. Dominik Drabik

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
16 March 2020 in Langmuir
Verified
Journal Article
Open access
DDDominik Drabik
Dominik Drabik
GCGrzegorz Chodaczek
Grzegorz Chodaczek
SKSebastian Kraszewski
Sebastian Kraszewski
MLMarek Langner
Marek Langner
Lipid bilayers are active participants in many crucial biological processes. They can be observed in different phases - liquid and solid, respectively. Liquid phase is predominant in biological systems. The solid phase - both crystalline and gel phases - is under investigation due to their resilience to mechanical stress and tight packing of lipids. Mechanical properties of lipids affect its dynamics, therefore influencing the transformation of cell plasma and endomembrane. Mechanical properties of lipid bilayers are also an important parameter in the design and production of supramolecular lipid-based drug delivery systems. To this end, in this work we focused on investigating the effect of solid phases of lipid bilayers on its structural parameters and mechanical properties using theoretical Molecular Dynamics studies on atomistic models of whole vesicles. Those include area per lipid, membrane thickness, density vesicle profiles, bending rigidity coefficient and area compressibility. Additionally the bending rigidity coefficient was measured using the flicker noise spectroscopy. The two approaches produced very similar and consistent results. We showed that, contrary to our expectations, bending rigidity coefficients of solid-ordered bilayers for vesicles decreased with increase of lipid transition temperature. This tendency was reverse in planar systems. Additionally, we’ve observed increase of membrane thickness and area compressibility and decrease of area per lipid. We hope those results will provide valuable mechanical insight for behavior in solid phases and differences between spherical and planar confirmations.

1 January 2018 in Biomedicine & Pharmacotherapy
Verified
Journal Article
Closed access
KFKaja Fraczkowska
Kaja Fraczkowska
MBMarcin Bacia
Marcin Bacia
MPMagdalena Przybyło
Magdalena Przybyło
DDDominik Drabik
Dominik Drabik
Aleksandra KaczorowskaAleksandra Kaczorowska
Aleksandra Kaczorowska
MKMarta Kopaczyńska
Marta Kopaczyńska

1 February 2016 in Biochimica et Biophysica Acta (BBA) - Biomembranes
Verified
Journal Article
Closed access
DDDominik Drabik
Dominik Drabik
MPMagdalena Przybyło
Magdalena Przybyło
GCGrzegorz Chodaczek
Grzegorz Chodaczek
AIAleš Iglič
Aleš Iglič
MLMarek Langner
Marek Langner

1 May 2018 in Chemistry and Physics of Lipids
Verified
Journal Article
Closed access
DDDominik Drabik
Dominik Drabik
JDJoanna Doskocz
Joanna Doskocz
MPMagdalena Przybyło
Magdalena Przybyło

Verified
Journal Article
Open access
PDF file
DDDominik Drabik
Dominik Drabik
GCGrzegorz Chodaczek
Grzegorz Chodaczek
SKSebastian Kraszewski
Sebastian Kraszewski
Alzheimer’s disease (AD) is a neurodegenerative disease that results in memory loss and the impairment of cognitive skills. Several mechanisms of AD’s pathogenesis were proposed, such as the progressive accumulation of amyloid-β (Aβ) and τ pathology. Nevertheless, the exact neurodegenerative mechanism of the Aβ remains complex and not fully understood. This paper proposes an alternative hypothesis of the mechanism based on maintaining the neuron membrane’s mechanical balance. The incorporation of Aβ decreases the lipid membrane’s elastic properties, which eventually leads to the impairment of membrane clustering, disruption of mechanical wave propagation, and change in gamma oscillations. The first two disrupt the neuron’s ability to function correctly while the last one decreases sensory encoding and perception enabling. To begin discussing this mechanical-balance hypothesis, we measured the effect of two selected peptides, Aβ-40 and Aβ-42, as well as their fluorescently labeled modification, on membrane mechanical properties. The decrease of bending rigidity, consistent for all investigated peptides, was observed using molecular dynamic studies and experimental flicker-noise techniques. Additionally, wave propagation was investigated with molecular dynamic studies in membranes with and without incorporated neurodegenerative peptides. A change in membrane behavior was observed in the membrane system with incorporated Aβ.

Verified
Journal Article
Open access
PDF file
MPMagdalena Przybyło
Magdalena Przybyło
DDDominik Drabik
Dominik Drabik
JDJoanna Doskocz
Joanna Doskocz
Ales IglicAles Iglic
Ales Iglic
MLMarek Langner
Marek Langner
The molecular details of the passive water flux across the hydrophobic membrane interior are still a matter of debate. One of the postulated mechanisms is the spontaneous, water-filled pore opening, which facilitates the hydrophilic connection between aqueous phases separated by the membrane. In the paper, we provide experimental evidence showing that the spontaneous lipid pore formation correlates with the membrane mechanics; hence, it depends on the composition of the lipid bilayer and the concentration of the osmotically active compound. Using liposomes as an experimental membrane model, osmotically induced water efflux was measured with the stopped-flow technique. Shapes of kinetic curves obtained at low osmotic pressure differences are interpreted in terms of two events: the lipid pore opening and water flow across the aqueous channel. The biological significance of the dependence of the lipid pore formation on the concentration difference of an osmotically active compound was illustrated by the demonstration that osmotically driven water flow can be accompanied by the dissipation of the pH gradient. The application of the Helfrich model to describe the probability of lipid pore opening was validated by demonstrating that the probability of pore opening correlates with the membrane bending rigidity. The correlation was determined by experimentally derived bending rigidity coefficients and probabilities of lipid pores opening.