Przemyslaw Biecek

Prof. Przemyslaw Biecek

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 April 2022
Verified
Book Chapter
Open access
PDF file
Andreas HolzingerAndreas Holzinger
Andreas Holzinger
ASAnna Saranti
Anna Saranti
CMChristoph Molnar
Christoph Molnar
PBPrzemyslaw Biecek
Przemyslaw Biecek
WSWojciech Samek
Wojciech Samek
Explainable Artificial Intelligence (xAI) is an established field with a vibrant community that has developed a variety of very successful approaches to explain and interpret predictions of complex machine learning models such as deep neural networks. In this article, we briefly introduce a few selected methods and discuss them in a short, clear and concise way. The goal of this article is to give beginners, especially application engineers and data scientists, a quick overview of the state of the art in this current topic. The following 17 methods are covered in this chapter: LIME, Anchors, GraphLIME, LRP, DTD, PDA, TCAV, XGNN, SHAP, ASV, Break-Down, Shapley Flow, Textual Explanations of Visual Models, Integrated Gradients, Causal Models, Meaningful Perturbations, and X-NeSyL.

19 February 2024 in Information Fusion
Verified
Journal Article
Closed access
HBHubert Baniecki
Hubert Baniecki
PBPrzemyslaw Biecek
Przemyslaw Biecek

21 June 2021 in Journal of the Operational Research Society
Verified
Journal Article
Closed access
MBMichael Bücker
Michael Bücker
GSGero Szepannek
Gero Szepannek
AGAlicja Gosiewska
Alicja Gosiewska
PBPrzemyslaw Biecek
Przemyslaw Biecek
A major requirement for credit scoring models is to provide a maximally accurate risk prediction. Additionally, regulators demand these models to be transparent and auditable. Thus, in credit scoring, very simple predictive models such as logistic regression or decision trees are still widely used and the superior predictive power of modern machine learning algorithms cannot be fully leveraged. Significant potential is therefore missed, leading to higher reserves or more credit defaults. This article works out different dimensions that have to be considered for making credit scoring models understandable and presents a framework for making “black box” machine learning models transparent, auditable, and explainable. Following this framework, we present an overview of techniques, demonstrate how they can be applied in credit scoring and how results compare to the interpretability of scorecards. A real world case study shows that a comparable degree of interpretability can be achieved while machine learning techniques keep their ability to improve predictive power.

12 June 2007 in BMC Genomics
Verified
Journal Article
Open access
PDF file
JKJoanna Kiraga
Joanna Kiraga
PMPawel Mackiewicz
Pawel Mackiewicz
DMDorota Mackiewicz
Dorota Mackiewicz
MKMaria Kowalczuk
Maria Kowalczuk
PBPrzemyslaw Biecek
Przemyslaw Biecek
SCStanislaw Cebrat
Stanislaw Cebrat
Background: The distribution of isoelectric point (pI) of proteins in a proteome is universal for all organisms. It is bimodal dividing the proteome into two sets of acidic and basic proteins. Different species however have different abundance of acidic and basic proteins that may be correlated with taxonomy, subcellular localization, ecological niche of organisms and proteome size.Results: We have analysed 1784 proteomes encoded by chromosomes of Archaea, Bacteria, Eukaryota, and also mitochondria, plastids, prokaryotic plasmids, phages and viruses. We have found significant correlation in more than 95% of proteomes between the protein length and pI in proteomes – positive for acidic proteins and negative for the basic ones. Plastids, viruses and plasmids encode more basic proteomes while chromosomes of Archaea, Bacteria, Eukaryota, mitochondria and phages more acidic ones. Mitochondrial proteomes of Viridiplantae, Protista and Fungi are more basic than Metazoa. It results from the presence of basic proteins in the former proteomes and their absence from the latter ones and is related with reduction of metazoan genomes. Significant correlation was found between the pI bias of proteomes encoded by prokaryotic chromosomes and proteomes encoded by plasmids but there is no correlation between eukaryotic nuclear-coded proteomes and proteomes encoded by organelles. Detailed analyses of prokaryotic proteomes showed significant relationships between pI distribution and habitat, relation to the host cell and salinity of the environment, but no significant correlation with oxygen and temperature requirements. The salinity is positively correlated with acidicity of proteomes. Host-associated organisms and especially intracellular species have more basic proteomes than free-living ones. The higher rate of mutations accumulation in the intracellular parasites and endosymbionts is responsible for the basicity of their tiny proteomes that explains the observed positive correlation between the decrease of genome size and the increase of basicity of proteomes. The results indicate that even conserved proteins subjected to strong selectional constraints follow the global trend in the pI distribution.Conclusion: The distribution of pI of proteins in proteomes shows clear relationships with length of proteins, subcellular localization, taxonomy and ecology of organisms. The distribution is also strongly affected by mutational pressure especially in intracellular organisms.

30 December 2022 in Knowledge-Based Systems
Verified
Journal Article
Open access
MKMateusz Krzyziński
Mateusz Krzyziński
MSMikołaj Spytek
Mikołaj Spytek
HBHubert Baniecki
Hubert Baniecki
PBPrzemyslaw Biecek
Przemyslaw Biecek

1 January 2019 in The R Journal
Verified
Journal Article
Open access
MSMateusz Staniak
Mateusz Staniak
PBPrzemyslaw Biecek
Przemyslaw Biecek