Changing ecological communities in response to anthropogenic activities and climate change has become a worldwide problem. The eutrophication of waterbodies in freshwater and seawater caused by the effects of human activities and nutrient inputs could result in harmful algae blooms (HABs), decreases water quality, reductions in biodiversity and threats to human health. Rapid and accurate monitoring and assessment of aquatic ecosystems are imperative. Environmental DNA (eDNA) analysis using high-throughput sequencing has been demonstrated to be an effective and sensitive assay for detecting and monitoring single or multiple species in different samples. In this study, we review the potential applications of eDNA approaches in controlling and mitigating eutrophication and HABs in freshwater and marine ecosystems. We use recent studies to highlight how eDNA methods have been shown to be a useful tool for providing comprehensive data in studies of eutrophic freshwater and marine environments. We also provide perspectives on using eDNA techniques to reveal molecular mechanisms in biological processes and mitigate eutrophication and HABs in aquatic ecosystems. Finally, we discuss the feasible applications of eDNA for monitoring biodiversity, surveying species communities and providing instructions for the conservation and management of the environment by integration with traditional methods and other advanced techniques.

Diatoms are fundamental carbon sources in a wide range of aquatic food webs and have the potential for wide application in addressing environmental change. Understanding the evolution of topics in diatom research will provide a clear and needed guide to strengthen research on diatoms. However, such an overview remains unavailable. In this study, we used Latent Dirichlet Allocation (LDA), a generative model, to identify topics and determine their trends (i.e., cold and hot topics) by analyzing the abstracts of 19,000 publications from the Web of Science that were related to diatoms during 1991–2018. A total of 116 topics were identified from a Bayesian model selection. The hot topics (diversity, environmental indicator, climate change, land use, and water quality) that were identified by LDA indicated that diatoms are increasingly used as indicators to assess water quality and identify modern climate change impacts due to intensive anthropogenic activities. In terms of cold topics (growth rate, culture growth, cell life history, copepod feeding, grazing by microzooplankton, zooplankton predation, and primary productivity) and hot topics (spatial-temporal distribution, morphology, molecular identification, gene expression, and review), we determined that basic studies on diatoms have decreased and that studies tend to be more comprehensive. This study notes that future directions in diatom research will be closely associated with the application of diatoms in environmental management and climate change to cope with environmental challenges, and more comprehensive issues related to diatoms should be considered.

Phytoplankton blooms have caused many serious public safety incidents and eco-environmental problems worldwide and became a focus issue for research. Accurate and rapid monitoring of phytoplankton blooms is critical for forecasting, treating, and management. With the advantages of large spatial coverage and high temporal resolution, remote sensing has been widely used to monitor phytoplankton blooms. Numerous advances have been made in the remote sensing of phytoplankton blooms, biomass, and phenology over the past several decades. To fully understand the development history, research hotspots, and future trends of remote-sensing technology in the study of phytoplankton blooms, we conducted a comprehensive review to systematically analyze the research trends in the remote sensing of phytoplankton blooms through bibliometrics. Our findings showed that research on the use of remote-sensing technology in this field increased substantially in the past 30 years. “Oceanography,” “Environmental Sciences,” and “Remote Sensing” are the most popular subject categories. Remote Sensing of Environment, Journal of Geophysical Research: Oceans, and International Journal of Remote Sensing were the journals with the most published articles. The results of the analysis of international influence and cooperation showed that the United States had the greatest influence in this field and that the cooperation between China and the United States was the closest. The Chinese Academy of Sciences published the largest number of papers, reaching 542 articles. Keyword and topic analysis results showed that “phytoplankton,” “chlorophyll,” and “ocean” were the most frequently occurring keywords, while “eutrophication management and monitoring,” “climate change,” “lakes,” and “remote-sensing algorithms” were the most popular research topics in recent years. Researchers are now paying increasing attention to the phenological response of phytoplankton under the conditions of climate change and the application of new remote-sensing methods. With the development of new remote-sensing technology and the expansion of phytoplankton research, future research should focus on (1) accurate observation of phytoplankton blooms; (2) the traits of phytoplankton blooms; and (3) the drivers, early warning, and management of phytoplankton blooms. In addition, we discuss the future challenges and opportunities in the use of remote sensing in phytoplankton blooms. Our review will promote a deeper and wider understanding of the field.