The average productive lifespan is approximately 3 to 4 years in countries with high-producing dairy cows. This is much shorter than the natural life expectancy of dairy cattle. Dairy farmers continue to cull cows primarily for reasons related to poor health, failure to conceive or conformation problems prior to culling. These reasons may indicate reduced welfare leading up to culling. Improvements in health care, housing and nutrition will reduce forced culling related to these welfare reasons. However, productive lifespan has remained similar in decades, despite large improvements in cow comfort and genetic selection for the ability to avoid culling. On the other hand, genetic progress for economically important traits is accelerating within the last decade, which should slightly shorten the average economically optimal productive lifespan. A major driver of productive lifespan is the availability of replacement heifers that force cows out when they calve. The average productive lifespan could be extended by reducing the supply of dairy heifers, which would also have benefits for environmental sustainability. Improvements in culling decision support tools would strengthen economically optimal replacement decisions. In conclusion, major factors of the relatively short productive lifespan of dairy cows are welfare-related, but other economic factors like supply of heifers, genetic progress and non-optimal decision-making also play important roles.

Microbial communities play critical roles in the gastrointestinal tracts (GIT) of preruminant calves by influencing performance and health. However, little is known about the establishment of microbial communities in the calf GIT or their dynamics during development. In this study, next-generation sequencing was used to assess changes in the bacterial communities of the rumen, jejunum, cecum, and colon in 26 crossbred calves at four developmental stages (7, 28, 49, and 63 days old). Alpha diversity differed among GIT regions with the lowest diversity and evenness in the jejunum, whereas no changes in alpha diversity were observed across developmental stage. Beta diversity analysis showed both region and age effects, with low numbers of operational taxonomic units (OTUs) shared between regions within a given age group or between ages in a given region. Taxonomic analysis revealed that several taxa coexisted in the rumen, jejunum, cecum, and colon but that their abundances differed considerably by GIT region and age. As calves aged, we observed lower abundances of taxa such asBacteroides,Parabacteroides, andParaprevotellawith higher abundances ofBulleidiaandSucciniclasticumin the rumen. The jejunum also displayed taxonomic changes with increases inClostridiaceaeandTuricibactertaxa in older calves. In the lower gut, taxa such asLactobacillus,Blautia, andFaecalibacteriumdecreased and S24-7,Paraprevotella, andPrevotellaincreased as calves aged. These data support a model whereby early and successive colonization by bacteria occurs across the GIT of calves and provides insights into the temporal dynamics of the GIT microbiota of dairy calves during preweaning development.IMPORTANCEThe gastrointestinal tracts (GIT) of ruminants, such as dairy cows, house complex microbial communities that contribute to their overall health and support their ability to produce milk. For example, the rumen microbiota converts feed into usable nutrients, while the jejunal microbiota provides access to protein. Thus, establishing a properly functioning GIT microbiota in dairy calves is critical to their productivity as adult cows. However, little is known about the establishment, maintenance, and dynamics of the calf GIT microbiota in early life. In this study, we evaluated the bacterial communities in the rumen, jejunum, cecum, and colon in dairy calves across preweaning development and show that they are highly variable early on in life before transitioning to a stable community. Understanding the dairy calf GIT microbiota has implications for ensuring proper health during early life and will aid in efforts to develop strategies for improving downstream production.

At birth, calves display an underdeveloped rumen that eventually matures into a fully functional rumen as a result of solid food intake and microbial activity. However, little is known regarding the gradual impact of pre-weaning diet on the establishment of the rumen microbiota. Here, we employed next-generation sequencing to investigate the effects of the inclusion of starter concentrate (M: milk-fed versus MC: milk plus starter concentrate fed) on archaeal, bacterial and anaerobic fungal communities in the rumens of 45 crossbred dairy calves across pre-weaning development (7, 28, 49 and 63 days). Our results show that archaeal, bacterial and fungal taxa commonly found in the mature rumen were already established in the rumens of calves at 7 days old, regardless of diet. This confirms that microbiota colonization occurs in the absence of solid substrate. However, diet did significantly impact some microbial taxa. In the bacterial community, feeding starter concentrate promoted greater diversity of bacterial taxa known to degrade readily fermentable carbohydrates in the rumen (e.g. Megasphaera, Sharpea and Succinivribrio). Shifts in the ruminal bacterial community also correlated to changes in fermentation patterns that favored the colonization of Methanosphaera sp.A4 in the rumen of MC calves. In contrast, M calves displayed a bacterial community dominated by taxa able to utilize milk nutrients (e.g. Lactobacillus, Bacteroides and Parabacteroides). In both diet groups, the dominance of these milk-associated taxa decreased with age, suggesting that diet and age simultaneously drive changes in the structure and abundance of bacterial communities in the developing rumen. Changes in the composition and abundance of archaeal communities were attributed exclusively to diet, with more highly abundant Methanosphaera and less abundant Methanobrevibacter in MC calves. Finally, the fungal community was dominated by members of the genus SK3 and Caecomyces. Relative anaerobic fungal abundances did not change significantly in response to diet or age, likely due to high inter-animal variation and the low fiber content of starter concentrate. This study provides new insights into the colonization of archaea, bacteria and anaerobic fungi communities in pre-ruminant calves that may be useful in designing strategies to promote colonization of target communities to improve functional