Dimah Dera

Dr. Dimah Dera


Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2017
Verified
Book Chapter
Closed access
PBParth Bhavsar
Parth Bhavsar
ISIlya Safro
Ilya Safro
NBNidhal Bouaynaya
Nidhal Bouaynaya
RPRobi Polikar
Robi Polikar
DDDimah Dera
Dimah Dera

14 July 2021 in IEEE Transactions on Signal Processing
Verified
Journal Article
Open access
DDDimah Dera
Dimah Dera
NBNidhal Bouaynaya
Nidhal Bouaynaya
Ghulam RasoolGhulam Rasool
Ghulam Rasool
RSRoman Shterenberg
Roman Shterenberg
HFHassan M. Fathallah-Shaykh
Hassan M. Fathallah-Shaykh
Deep neural networks (DNNs) have surpassed human-level accuracy in various learning tasks. However, unlike humans who have a natural cognitive intuition for probabilities, DNNs cannot express their uncertainty in the output decisions. This limits the deployment of DNNs in mission-critical domains, such as warfighter decision-making or medical diagnosis. Bayesian inference provides a principled approach to reason about model's uncertainty by estimating the posterior distribution of the unknown parameters. The challenge in DNNs remains the multi-layer stages of non-linearities, which make the propagation of high-dimensional distributions mathematically intractable. This paper establishes the theoretical and algorithmic foundations of uncertainty or belief propagation by developing new deep learning models named PremiUm-CNNs (Propagating Uncertainty in Convolutional Neural Networks). We introduce a tensor normal distribution as a prior over convolutional kernels and estimate the variational posterior by maximizing the evidence lower bound (ELBO). We start by deriving the first-order mean-covariance propagation framework. Later, we develop a framework based on the unscented transformation (correct at least up to the second-order) that propagates sigma points of the variational distribution through layers of a CNN. The propagated covariance of the predictive distribution captures uncertainty in the output decision. Comprehensive experiments conducted on diverse benchmark datasets demonstrate: 1) superior robustness against noise and adversarial attacks, 2) self-assessment through predictive uncertainty that increases quickly with increasing levels of noise or attacks, and 3) an ability to detect a targeted attack from ambient noise.

22 June 2023 in IEEE Transactions on Knowledge and Data Engineering
Verified
Journal Article
Open access
DDDimah Dera
Dimah Dera
SASabeen Ahmed
Sabeen Ahmed
NBNidhal Bouaynaya
Nidhal Bouaynaya
Ghulam RasoolGhulam Rasool
Ghulam Rasool
The massive time-series production through the Internet of Things and digital healthcare requires novel data modeling and prediction. Recurrent neural networks (RNNs) are extensively used for analyzing time-series data. However, these models are unable to assess prediction uncertainty, which is particularly critical in heterogeneous and noisy environments. Bayesian inference allows reasoning about predictive uncertainty by estimating the posterior distribution of the parameters. The challenge remains in propagating the high-dimensional distribution through the sequential, non-linear layers of RNNs, resulting in mode collapse leading to erroneous uncertainty estimation and exacerbating the gradient explosion problem. This paper proposes a TRustworthy Uncertainty propagation for Sequential Time-series analysis (TRUST) in RNNs by introducing a Gaussian prior over network parameters and estimating the first two moments of the Gaussian variational distribution using the evidence lower bound. We propagate the variational moments through the sequential, non-linear layers of RNNs using the first-order Taylor approximation. The propagated covariance of the predictive distribution captures uncertainty in the output decision. The extensive experiments using ECG5000 and PeMS-SF classification and weather and power consumption prediction tasks demonstrate 1) significant robustness of TRUST-RNNs against noise and adversarial attacks and 2) self-assessment through the uncertainty that increases significantly with increasing noise.

1 October 2019
Verified
Conference Paper
Closed access
DDDimah Dera
Dimah Dera
Ghulam RasoolGhulam Rasool
Ghulam Rasool
NBNidhal Bouaynaya
Nidhal Bouaynaya

14 July 2016 in Bulletin of Mathematical Biology
Verified
Journal Article
Closed access
PDF file
DDDimah Dera
Dimah Dera
NBNidhal Bouaynaya
Nidhal Bouaynaya
HFHassan M. Fathallah-Shaykh
Hassan M. Fathallah-Shaykh

1 January 2025 in Cancer Informatics
Verified
Journal Article
Open access
DFDominic Flack
Dominic Flack
ATAakash Tripathi
Aakash Tripathi
AWAsim Waqas
Asim Waqas
GRGhulam Rasool
Ghulam Rasool
DDDimah Dera
Dimah Dera
Objectives: Multimodal deep learning models have the potential to significantly improve survival predictions and treatment planning for cancer patients. These models integrate diverse data modalities using early, intermediate, or late fusion techniques. However, many existing multimodal models either underperform or show only marginal improvements over unimodal models. To establish the true efficacy of multimodal survival prediction models, it is critical to demonstrate consistent and substantial advantages over unimodal counterparts. Methods: In this paper, we introduce the Robust Multimodal Survival Model (RMSurv), a novel discrete late fusion model that leverages synthetic data generation to compute time-dependent weights for various modalities. RMSurv utilizes up to 6 distinct data modalities from The Cancer Genome Atlas Program (TCGA) non-small cell lung cancer and the TCGA pan-cancer datasets to predict overall survival over a period of 10 years. The key innovations of RMSurv are the calculation of time-dependent late fusion weights using a synthetically generated dataset and a new statistical feature normalization technique to enhance the interpretability and accuracy of discrete survival predictions. We evaluate the performance of the proposed method and several alternatives with cross validation using the concordance index, and vary the number of modalities included. We also create a late fusion simulation to highlight the complex relationships of multimodal fusion. Results: In our experiments, RMSurv outperforms the best unimodal model’s Concordance index (C-Index) by 0.0273 on the 6-modal TCGA Lung Adenocarcinoma (LUAD) dataset. Existing late and early fusion methods improved the C-index by only 0.0143 and 0.0072, respectively. RMSurv also performs best on the combined TCGA non-small-cell lung cancer dataset and the TCGA pan-cancer dataset. Conclusions: These advancements underscore RMSurv’s potential as a powerful approach for survival prediction, establishing robust multimodal benefits, and setting a new benchmark for survival prediction models in pan-cancer settings.