Faiza Shafique Khan

Dr. Faiza Shafique Khan

Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China
+2
orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 January 2024 in Horticulture Advances
Verified
Journal Article
Open access
PDF file
Faiza Shafique KhanFaiza Shafique Khan
Faiza Shafique Khan
Farhan GoherFarhan Goher
Farhan Goher
CHChun-Gen Hu
Chun-Gen Hu
JinZhi ZhangJinZhi Zhang
JinZhi Zhang
The WUSCHEL-related homeobox (WOX) transcription factors (TFs) belong to the homeodomain (HD) family. WOX TFs are involved in various regulatory pathways related to plant growth and development. In addition to their recognized role in various development processes, many reports suggest that they play a key role in abiotic stress perception in plants. However, their underlying molecular mechanisms have rarely been studied in horticultural crops. WOXs govern the transcription of the target genes through specific binding to the cis-regulatory elements present in their promoters. Additionally, they associate with other factors to form a specific pathway regulating numerous abiotic stress responses. Here, we review the recent advances in the multifaceted functions of WOXs in the complex, developmental, and abiotic stress-sensing networks, with particular emphasis on regulating the related genes and other TFs. In addition, we suggest that WOXs are essential components of the gene regulatory networks involved in the response of plants to abiotic stress tolerance and aim to provide a reference for future research.

9 August 2023 in Plant Biology
Verified
Journal Article
Closed access
Faiza Shafique KhanFaiza Shafique Khan
Faiza Shafique Khan
Farhan GoherFarhan Goher
Farhan Goher
MPM. N. Paulsmeyer
M. N. Paulsmeyer
CHC.‐G. Hu
C.‐G. Hu
JinZhi ZhangJinZhi Zhang
JinZhi Zhang

Verified
Journal Article
Open access
PDF file
Faiza Shafique KhanFaiza Shafique Khan
Faiza Shafique Khan
RZRen-Fang Zeng
Ren-Fang Zeng
ZGzhimeng gan
zhimeng gan
JinZhi ZhangJinZhi Zhang
JinZhi Zhang
CHChun-Gen Hu
Chun-Gen Hu
WUSCHEL-related homeobox (WOX) transcription factors (TFs) are well known for their role in plant development but are rarely studied in citrus. In this study, we identified 11 putative genes from the sweet orange genome and divided the citrus WOX genes into three clades (modern/WUSCHEL(WUS), intermediate, and ancient). Subsequently, we performed syntenic relationship, intron-exon organization, motif composition, and cis-element analysis. Co-expression analysis based on RNA-seq and tissue-specific expression patterns revealed that CsWOX gene expression has multiple intrinsic functions. CsWUS homolog of AtWUS functions as a transcriptional activator and binds to specific DNA. Overexpression of CsWUS in tobacco revealed dramatic phenotypic changes, including malformed leaves and reduced gynoecia with no seed development. Silencing of CsWUS in lemon using the virus-induced gene silencing (VIGS) system implied the involvement of CsWUS in cells of the plant stem. In addition, CsWUS was found to interact with CsCYCD3, an ortholog in Arabidopsis (AtCYCD3,1). Yeast one-hybrid screening and dual luciferase activity revealed that two TFs (CsRAP2.12 and CsHB22) bind to the promoter of CsWUS and regulate its expression. Altogether, these results extend our knowledge of the WOX gene family along with CsWUS function and provide valuable findings for future study on development regulation and comprehensive data of WOX members in citrus.

20 December 2021 in Planta
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Journal Article
Closed access
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Faiza Shafique KhanFaiza Shafique Khan
Faiza Shafique Khan
ZGzhimeng gan
zhimeng gan
ELEn-Qing Li
En-Qing Li
MRMeng-Ke Ren
Meng-Ke Ren
CHChun-Gen Hu
Chun-Gen Hu
JinZhi ZhangJinZhi Zhang
JinZhi Zhang

12 December 2022 in Frontiers in Plant Science
Verified
Journal Article
Open access
Faiza Shafique KhanFaiza Shafique Khan
Faiza Shafique Khan
Farhan GoherFarhan Goher
Farhan Goher
DZDapeng Zhang
Dapeng Zhang
PSPeng Shi
Peng Shi
ZLZhiying Li
Zhiying Li
YWYong Wang
Yong Wang
Commercially important palms (oil palm, coconut, and date palm) are widely grown perennial trees with tremendous commercial significance due to food, edible oil, and industrial applications. The mounting pressure on the human population further reinforces palms’ importance, as they are essential crops to meet vegetable oil needs around the globe. Various conventional breeding methods are used for the genetic improvement of palms. However, adopting new technologies is crucial to accelerate breeding and satisfy the expanding population’s demands. CRISPR/Cas9 is an efficient genome editing tool that can incorporate desired traits into the existing DNA of the plant without losing common traits. Recent progress in genome editing in oil palm, coconut and date palm are preliminarily introduced to potential readers. Furthermore, detailed information on available CRISPR-based genome editing and genetic transformation methods are summarized for researchers. We shed light on the possibilities of genome editing in palm crops, especially on the modification of fatty acid biosynthesis in oil palm. Moreover, the limitations in genome editing, including inadequate target gene screening due to genome complexities and low efficiency of genetic transformation, are also highlighted. The prospects of CRISPR/Cas9-based gene editing in commercial palms to improve sustainable production are also addressed in this review paper.

7 May 2023 in Forests
Verified
Journal Article
Open access
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QWQiuen Wei
Qiuen Wei
PSPeng Shi
Peng Shi
Faiza Shafique KhanFaiza Shafique Khan
Faiza Shafique Khan
Yin Min HtweYin Min Htwe
Yin Min Htwe
Zhang DapengZhang Dapeng
Zhang Dapeng
YWYong Wang
Yong Wang
Oil palm (Elaeis guineensis) is the highest oil-yielding commercially grown perennial tree. Oil palm germplasm conservation and in vitro clonal propagation strengthened the world’s efforts to ensure future food security. Cryopreservation provides long-term storage for germplasm. The storage of plant material at cryogenic temperatures (−196 °C) following dehydration causes cryoinjury. The cryotolerance mechanism has rarely been studied in oil palm zygotic embryos (ZE) and embryogenic calli (EC). A simple and effective cryopreservation method was established for ZE. ZE surrounded by endosperm was air-dried for 3 days without any complicated chemical pre-treatments before cryopreservation, while the viability rate and following germination rate could reach up to 96.67% and 90.88%, respectively. As for EC, the preferred method could be pre-culture in liquid MS medium with 0.3 M sucrose for 12 h and PVS2 treatment for 5 min prior to cryopreservation, and the viability rate reached 68.33%. SSR markers were used to verify the genetic stability after cryopreservation. In addition, changes in enzyme activities (CAT, POD, and SOD) showed a consistent trend with H2O2 production among ZE samples, indicating that these antioxidants were involved in ROS scavenging. Furthermore, differently expressed genes (DEGs) related to ROS, osmotic, and cold stress responses were selected for correlation network analysis. Most genes involved in ROS production (RBOH, PAO, and PRX) and ROS scavenging (APX, PER, SOD, CAT, GPX, and AOX) showed higher expression levels in EC, suggesting that EC was more sensitive to oxidative stress than ZE. The cryotolerance mechanism was further summarized accordingly. These results contributed to cryopreservation methods and provided a better understanding of cryotolerance in oil palm.