Mohammad H. Jafari

Dr. Mohammad H. Jafari

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 June 2023 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
RLRuben T. Lucassen
Ruben T. Lucassen
MJMohammad H. Jafari
Mohammad H. Jafari
NDNicole M. Duggan
Nicole M. Duggan
NJNick Jowkar
Nick Jowkar
AMAlireza Mehrtash
Alireza Mehrtash
TKTina Kapur
Tina Kapur
Lung ultrasound (LUS) is an important imaging modality used by emergency physicians to assess pulmonary congestion at the patient bedside. B-line artifacts in LUS videos are key findings associated with pulmonary congestion. Not only can the interpretation of LUS be challenging for novice operators, but visual quantification of B-lines remains subject to observer variability. In this work, we investigate the strengths and weaknesses of multiple deep learning approaches for automated B-line detection and localization in LUS videos. We curate and publish, BEDLUS , a new ultrasound dataset comprising 1,419 videos from 113 patients with a total of 15,755 expert-annotated B-lines. Based on this dataset, we present a benchmark of established deep learning methods applied to the task of B-line detection. To pave the way for interpretable quantification of B-lines, we propose a novel “single-point” approach to B-line localization using only the point of origin. Our results show that (a) the area under the receiver operating characteristic curve ranges from 0.864 to 0.955 for the benchmarked detection methods, (b) within this range, the best performance is achieved by models that leverage multiple successive frames as input, and (c) the proposed single-point approach for B-line localization reaches an F $_{1}$ -score of 0.65, performing on par with the inter-observer agreement. The dataset and developed methods can facilitate further biomedical research on automated interpretation of lung ultrasound with the potential to expand the clinical utility.

2 April 2019 in International Journal of Computer Assisted Radiology and Surgery
Verified
Journal Article
Closed access
PDF file
MJMohammad H. Jafari
Mohammad H. Jafari
HGHany Girgis
Hany Girgis
NWNathan Van Woudenberg
Nathan Van Woudenberg
ZLZhibin Liao
Zhibin Liao
RRRobert Rohling
Robert Rohling
TTTerasa Tsang
Terasa Tsang

20 September 2018
Verified
Book Chapter
Closed access
PDF file
MJMohammad H. Jafari
Mohammad H. Jafari
HGHany Girgis
Hany Girgis
ZLZhibin Liao
Zhibin Liao
DBDelaram Behnami
Delaram Behnami
AAAmir Abdi
Amir Abdi
PAPurang Abolmaesumi
Purang Abolmaesumi

20 April 2020 in International Journal of Computer Assisted Radiology and Surgery
Verified
Journal Article
Closed access
PDF file
MJMohammad H. Jafari
Mohammad H. Jafari
HGHany Girgis
Hany Girgis
NWNathan Van Woudenberg
Nathan Van Woudenberg
NMNathaniel Moulson
Nathaniel Moulson
CLChristina Luong
Christina Luong
TTTeresa Tsang
Teresa Tsang

27 October 2021 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
MJMohammad H. Jafari
Mohammad H. Jafari
CLChristina Luong
Christina Luong
MTMichael Tsang
Michael Tsang
AGAng Nan Gu
Ang Nan Gu
NWNathan Van Woudenberg
Nathan Van Woudenberg
PAPurang Abolmaesumi
Purang Abolmaesumi
This paper presents U-LanD, a framework for automatic detection of landmarks on key frames of the video by leveraging the uncertainty of landmark prediction. We tackle a specifically challenging problem, where training labels are noisy and highly sparse. U-LanD builds upon a pivotal observation: a deep Bayesian landmark detector solely trained on key video frames, has significantly lower predictive uncertainty on those frames vs. other frames in videos. We use this observation as an unsupervised signal to automatically recognize key frames on which we detect landmarks. As a test-bed for our framework, we use ultrasound imaging videos of the heart, where sparse and noisy clinical labels are only available for a single frame in each video. Using data from 4,493 patients, we demonstrate that U-LanD can exceedingly outperform the state-of-the-art non-Bayesian counterpart by a noticeable absolute margin of 42% in ${R}^{{2}}$ score, with almost no overhead imposed on the model size.

10 October 2019
Verified
Book Chapter
Closed access
PDF file
MJMohammad H. Jafari
Mohammad H. Jafari
ZLZhibin Liao
Zhibin Liao
HGHany Girgis
Hany Girgis
MPMehran Pesteie
Mehran Pesteie
RRRobert Rohling
Robert Rohling
PAPurang Abolmaesumi
Purang Abolmaesumi