Alissa Deming

Dr. Alissa Deming

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 February 2021 in Animals
Verified
Journal Article
Open access
PDF file
ADAlissa Deming
Alissa Deming
JWJim Wellehan
Jim Wellehan
KCKathleen M. Colegrove
Kathleen M. Colegrove
AHAilsa Jane Hall
Ailsa Jane Hall
jennifer luffjennifer luff
jennifer luff
FGFrances Gulland
Frances Gulland
Urogenital carcinoma in California sea lions (Zalophus californianus) is the most common cancer of marine mammals. Primary tumors occur in the cervix, vagina, penis, or prepuce and aggressively metastasize resulting in death. This cancer has been strongly associated with a sexually transmitted herpesvirus, otarine herpesvirus 1 (OtHV1), but the virus has been detected in genital tracts of sea lions without cancer and a causative link has not been established. To determine if OtHV1 has a role in causing urogenital carcinoma we sequenced the viral genome, quantified viral load from cervical tissue from sea lions with (n = 95) and without (n = 163) urogenital carcinoma, and measured viral mRNA expression using in situ mRNA hybridization (Basescope®) to quantify and identify the location of OtHV1 mRNA expression. Of the 95 sea lions diagnosed with urogenital carcinoma, 100% were qPCR positive for OtHV1, and 36% of the sea lions with a normal cervix were positive for the virus. The non-cancer OtHV1 positive cases had significantly lower viral loads in their cervix compared to the cervices from sea lions with urogenital carcinoma. The OtHV1 genome had several genes similar to the known oncogenes, and RNA in situ hybridization demonstrated high OtHV1 mRNA expression within the carcinoma lesions but not in normal cervical epithelium. The high viral loads, high mRNA expression of OtHV1 in the cervical tumors, and the presence of suspected OtHV1 oncogenes support the hypothesis that OtHV1 plays a significant role in the development of sea lion urogenital carcinoma.

31 March 2023 in Animals
Verified
Journal Article
Open access
PDF file
KDKirsten Donald
Kirsten Donald
ABAmanda Benedetti
Amanda Benedetti
VGVinicius Donisete Lima Rodrigues Goulart
Vinicius Donisete Lima Rodrigues Goulart
ADAlissa Deming
Alissa Deming
HNHendrik Nollens
Hendrik Nollens
Sabrina BrandoSabrina Brando
Sabrina Brando
Environmental enrichment devices (EEDs) have been proven to promote positive wellbeing in zoos and aquariums, and support animals’ reintroduction success; however, their use in rehabilitation centers is still limited. This pilot study investigated the safety and efficacy of three EEDs, Artificial Kelp, Horse KONG™ and Wubba Kong™, and their ability to decrease and/or eliminate undesired stereotypic behaviors or looking at staff/staff areas in seven wild California sea lions (CSLs) and eight northern elephant seals (NESs) undergoing rehabilitation in Southern California. Observers conducted instantaneous sampling once a minute during a 30-min baseline, followed by a 30-min EED implementation on one focal animal at a time. The data were analyzed with generalized linear mixed models (GLMM). All three EEDs were found to be durable and safe throughout the study. Our results show a significant reduction in stereotypical behaviors compared to no EED treatments in CSLs, with the most significant effect being with the Horse KONG™. The Wubba KONG™ and Artificial Kelp provisions also reduced the undesired behavior in both species of being focused on human caretakers. Individual preferences for specific EEDs were found within species and between species, with the NESs using EEDs more than the CSLs. This study highlights the beneficial aspect of EEDs for pinnipeds in rehabilitation centers for improving their quality of life.

16 August 2023 in bioRxiv
Verified
Preprint
Open access
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JSJayme Smith
Jayme Smith
JCJacob A. Cram
Jacob A. Cram
MBMalena Berndt
Malena Berndt
VHVanessa Hoard
Vanessa Hoard
DSDana Shultz
Dana Shultz
ADAlissa Deming
Alissa Deming
Domoic acid producing blooms of the diatom genus Pseudo-nitzschia are pervasive in coastal environments globally. Domoic acid, a neurotoxin, accumulates via trophic transfer into marine food webs and are often associated with mass marine mammal mortality and stranding events. In Southern California, California sea lions ( Zalophus californiaus ) are an indicator species for food web impacts of domoic acid because they are abundant secondary consumers, sensitive to domoic acid intoxication, and are actively monitored by stranding networks. However, domoic acid exposure may occur a distance from where a sea lion ultimately strands. This spatiotemporal variation complicates coupling domoic acid observations in water to strandings. Therefore, we sought to quantify whether monitoring data from four pier sites across the region, covering nearly 700 km of coastline from 2015-2019, could be used to predict adult and subadult sea lion strandings along the 68 km Orange County coastline surveyed by the Pacific Marine Mammal Center. We found that increased sea lion strandings were often observed just prior to an increase in particulate domoic acid at the piers, confirming that clusters of subadult and adult sea lion strandings with clinical signs of domoic acid intoxication a serve as indicators of bloom events. In addition, domoic acid concentrations at Stearns Wharf, nearly 200 km from stranding locations, best predicted increased total sea lion strandings, and strandings of sea lions with domoic acid intoxication symptoms. Particulate domoic acid concentrations greater than 0.05 μg/L at Stearns Wharf led to a detectable increase in stranding probability in Orange County, and concentrations over 0.25 μg/L resulted in a nearly 1.6-fold increase in stranding probabilities for a given week.

24 January 2026 in Harmful Algae
Verified
Journal Article
Closed access
PCPeter F. Cook
Peter F. Cook
CRColleen Reichmuth
Colleen Reichmuth
MMMegan E. Moriarty
Megan E. Moriarty
ADAlissa Deming
Alissa Deming
VHVanessa Fravel Hoard
Vanessa Fravel Hoard
FGFrances Gulland
Frances Gulland

10 February 2026 in Genes
Verified
Journal Article
Open access
PDF file
ILIsabella G. Livingston
Isabella G. Livingston
CWCatherine Wise
Catherine Wise
ADAllison Dickey
Allison Dickey
RTRachael Thomas
Rachael Thomas
ADAlissa Deming
Alissa Deming
MBMatthew Breen
Matthew Breen
Background/Objectives: Human-driven environmental change can promote cancer development in wild species, yet the pathophysiology of wildlife cancers remain largely unexplored. Urogenital carcinoma (UGC) in the California sea lion (CSL) (Zalophus californianus) is one of the most common cancer types documented in any wild mammal. The pathogenesis of UGC in CSLs is known to be multifactorial, with links to environmental contaminant exposure and infection by Otarine Herpesvirus-1 (OtHV-1); however, the genomic features of these cancers have not been thoroughly explored. Understanding UGC pathogenesis in the CSL has important implications for the health of humans and other species that share environment and diet. Methods: We leveraged the evolutionary conservation between the domestic dog and CSL genomes to perform cross-species whole-exome sequencing (WES) of CSL UGC tumors and matched normal tissue pairs. We also used PCR and Sanger sequencing to investigate the prevalence of DNA from OtHV-1. Results: Bioinformatic analyses identified shared somatic variants and DNA copy number aberrations in UGC tumor samples, including recurrent exonic single-nucleotide variants in CD274/PD-L1, and recurrent copy number gains in CD274/PD-L1, TNFRSF14, CD200, CDK4, and PLCG2. In an extended cohort of 70 CSLs (tumor, matched normals, and controls), a recurrent C > T single-nucleotide variant in exon 4 of CD274/PD-L1 was identified in 54 of 68 (79.4%) CSLs with diagnosed UGC. OtHV-1 DNA was detected in 67 of 70 individuals (95.8%). Conclusions: These results demonstrate that cross-species exome capture provides a means to identify genomic alterations that may play a role in the molecular pathogenesis of UGC in the CSL and adds to the body of evidence for an association between OtHV-1 and UGC in this species.