Urmi Roy

Dr. Urmi Roy

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 April 2013 in Cellular and Molecular Life Sciences
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Journal Article
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AWArmand G. Ngounou Wetie
Armand G. Ngounou Wetie
ISIzabela Sokolowska
Izabela Sokolowska
AWAlisa G. Woods
Alisa G. Woods
URUrmi Roy
Urmi Roy
KDKatrin Deinhardt
Katrin Deinhardt
Costel DarieCostel Darie
Costel Darie

27 November 2012 in Proteomics
Verified
Journal Article
Closed access
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AWArmand G. Ngounou Wetie
Armand G. Ngounou Wetie
ISIzabela Sokolowska
Izabela Sokolowska
AWAlisa G. Woods
Alisa G. Woods
URUrmi Roy
Urmi Roy
JLJoseph A. Loo
Joseph A. Loo
Costel DarieCostel Darie
Costel Darie

11 July 2007 in Biochemistry and Molecular Biology Education
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Journal Article
Closed access
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URUrmi Roy
Urmi Roy
LLLinda A. Luck
Linda A. Luck

1 January 2012 in Journal of Biological Chemistry
Verified
Journal Article
Open access
ISIzabela Sokolowska
Izabela Sokolowska
AWAlisa G. Woods
Alisa G. Woods
MGMary Ann Gawinowicz
Mary Ann Gawinowicz
URUrmi Roy
Urmi Roy
Costel DarieCostel Darie
Costel Darie
Tumor differentiation factor (TDF) is a recently discovered protein, produced by the pituitary gland and secreted into the bloodstream. TDF and TDF-P1, a 20-amino acid peptide selected from the open reading frame of TDF, induce differentiation in human breast and prostate cancer cells but not in other cells. TDF protein has no identified site of action or receptor, and its mechanism of action is unknown. Here, we used TDF-P1 to purify and identify potential TDF receptor (TDF-R) candidates from MCF7 steroid-responsive breast cancer cells and non-breast HeLa cancerous cells using affinity purification chromatography (AP), and mass spectrometry (MS). We identified four candidate proteins from the 70-kDa heat shock protein (HSP70) family in MCF7 cells. Experiments in non-breast HeLa cancerous cells did not identify any TDF-R candidates. AP and MS experiments were validated by AP and Western blotting (WB). We additionally looked for TDF-R in steroid-resistant BT-549 cells and human dermal fibroblasts (HDF-a) using AP and WB. TDF-P1 interacts with potential TDF-R candidates from MCF7 and BT-549 breast cells but not from HeLa or HDF-a cells. Immunofluorescence (IF) experiments identified GRP78, a TDF-R candidate, at the cell surface of MCF7, BT-549 breast cells, and HeLa cells but not HDF-a cells. IF of other HSP70 proteins demonstrated labeling on all four cell types. These results point toward GRP78 and HSP70 proteins as strong TDF-R candidates and suggest that TDF interacts with its receptor, exclusively on breast cells, through a steroid-independent pathway.

14 June 2012 in The FEBS Journal
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Journal Article
Closed access
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ISIzabela Sokolowska
Izabela Sokolowska
AWAlisa G. Woods
Alisa G. Woods
MGMary Ann Gawinowicz
Mary Ann Gawinowicz
URUrmi Roy
Urmi Roy
Costel DarieCostel Darie
Costel Darie

1 April 2020 in Immunologic Research
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Journal Article
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URUrmi Roy
Urmi Roy
The Japanese encephalitis virus (JEV) is one of the vector borne causes of encephalitis found in southeastern Asia. This positive single-stranded RNA virus is a member of the Flaviviridae family, which notably includes dengue, tick-borne, West Nile, Zika as well as yellow fever, and transmits to humans by infected mosquitos. The main site of interactions for antibodies against this virus is the envelope protein domain III (ED3). The present report investigates the time-dependent structural and conformational changes of JEV ED3 functional epitopes and escape mutants by computer simulations. The results indicate the presence of significant structural differences between the functional epitopes and the escape mutants. Mutation-induced structural/conformational instabilities of this type can decrease the antibody neutralization activity. Among the different escape mutants studied here, Ser40Lys/Asp41Arg appear to be most unstable, while Ser40Glu/Asp41Leu exhibit the lowest structural variations. The highest level of escape mutation observed in Ser40Lys is linked to the relatively higher values of root mean square deviation/fluctuation found in the molecular dynamics simulation of this protein. Secondary-structure deviations and depletion of H bonding are other contributing factors to the protein’s increased instability. Overall, the proteins with residue 41 mutations are found to be structurally more ordered than those with residue 40 mutations. The detailed time-based structural assessment of the mutant epitopes described here may contribute to the development of novel vaccines and antiviral drugs necessary to defend against future outbreaks of JEV escape mutants.