Jere Kaivosoja

Dr. Jere Kaivosoja

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 May 2018 in Agriculture
Verified
Journal Article
Open access
PDF file
NKNiko Koivumäki
Niko Koivumäki
EHEija Honkavaara
Eija Honkavaara
RNRoope Näsi
Roope Näsi
THTeemu Hakala
Teemu Hakala
ONOiva Niemeläinen
Oiva Niemeläinen
JKJere Kaivosoja
Jere Kaivosoja
Silage is the main feed in milk and ruminant meat production in Northern Europe. Novel drone-based remote sensing technology could be utilized in many phases of silage production, but advanced methods of utilizing these data are still developing. Grass swards are harvested three times in season, and fertilizer is applied similarly three times—once for each harvest when aiming at maximum yields. Timely information of the yield is thus necessary several times in a season for making decisions on harvesting time and rate of fertilizer application. Our objective was to develop and assess a novel machine learning technique for the estimation of canopy height and biomass of grass swards utilizing multispectral photogrammetric camera data. Variation in the studied crop stand was generated using six different nitrogen fertilizer levels and four harvesting dates. The sward was a timothy-meadow fescue mixture dominated by timothy. We extracted various features from the remote sensing data by combining an ultra-high resolution photogrammetric canopy height model (CHM) with a pixel size of 1.0 cm and red, green, blue (RGB) and near-infrared range intensity values and different vegetation indices (VI) extracted from orthophoto mosaics. We compared the performance of multiple linear regression (MLR) and a Random Forest estimator (RF) with different combinations of the CHM, RGB and VI features. The best estimation results with both methods were obtained by combining CHM and VI features and all three feature classes (CHM, RGB and VI features). Both estimators provided equally accurate results. The Pearson correlation coefficients (PCC) and Root Mean Square Errors (RMSEs) of the estimations were at best 0.98 and 0.34 t/ha (12.70%), respectively, for the dry matter yield (DMY) and 0.98 and 1.22 t/ha (11.05%), respectively, for the fresh yield (FY) estimations. Our assessment of the sensitivity of the method with respect to different development stages and different amounts of biomass showed that the use of the machine learning technique that integrated multiple features improved the results in comparison to the simple linear regressions. These results were extremely promising, showing that the proposed multispectral photogrammetric approach can provide accurate biomass estimates of grass swards, and could be developed as a low-cost tool for practical farming applications.

7 July 2018 in Remote Sensing
Verified
Journal Article
Open access
PDF file
RNRoope Näsi
Roope Näsi
NKNiko Koivumäki
Niko Koivumäki
JKJere Kaivosoja
Jere Kaivosoja
KAKatja Alhonoja
Katja Alhonoja
THTeemu Hakala
Teemu Hakala
EHEija Honkavaara
Eija Honkavaara
The timely estimation of crop biomass and nitrogen content is a crucial step in various tasks in precision agriculture, for example in fertilization optimization. Remote sensing using drones and aircrafts offers a feasible tool to carry out this task. Our objective was to develop and assess a methodology for crop biomass and nitrogen estimation, integrating spectral and 3D features that can be extracted using airborne miniaturized multispectral, hyperspectral and colour (RGB) cameras. We used the Random Forest (RF) as the estimator, and in addition Simple Linear Regression (SLR) was used to validate the consistency of the RF results. The method was assessed with empirical datasets captured of a barley field and a grass silage trial site using a hyperspectral camera based on the Fabry-Pérot interferometer (FPI) and a regular RGB camera onboard a drone and an aircraft. Agricultural reference measurements included fresh yield (FY), dry matter yield (DMY) and amount of nitrogen. In DMY estimation of barley, the Pearson Correlation Coefficient (PCC) and the normalized Root Mean Square Error (RMSE%) were at best 0.95% and 33.2%, respectively; and in the grass DMY estimation, the best results were 0.79% and 1.9%, respectively. In the nitrogen amount estimations of barley, the PCC and RMSE% were at best 0.97% and 21.6%, respectively. In the biomass estimation, the best results were obtained when integrating hyperspectral and 3D features, but the integration of RGB images and 3D features also provided results that were almost as good. In nitrogen content estimation, the hyperspectral camera gave the best results. We concluded that the integration of spectral and high spatial resolution 3D features and radiometric calibration was necessary to optimize the accuracy.

1 September 2020 in Remote Sensing of Environment
Verified
Journal Article
Open access
RORaquel Alves De Oliveira
Raquel Alves De Oliveira
RNRoope Näsi
Roope Näsi
ONOiva Niemeläinen
Oiva Niemeläinen
LNLaura Nyholm
Laura Nyholm
KAKatja Alhonoja
Katja Alhonoja
EHEija Honkavaara
Eija Honkavaara

9 September 2023 in Precision Agriculture
Verified
Journal Article
Open access
PDF file
RORaquel Alves De Oliveira
Raquel Alves De Oliveira
RNRoope Näsi
Roope Näsi
PKPanu Korhonen
Panu Korhonen
AMArja Mustonen
Arja Mustonen
ONOiva Niemeläinen
Oiva Niemeläinen
EHEija Honkavaara
Eija Honkavaara
Miniaturised hyperspectral cameras are becoming more easily accessible and smaller, enabling efficient monitoring of agricultural crops using unoccupied aerial systems (UAS). This study’s objectives were to develop and assess the performance of UAS-based hyperspectral cameras in the estimation of quantity and quality parameters of grass sward, including the fresh and dry matter yield, the nitrogen concentration (Ncont) in dry matter (DM), the digestibility of organic matter in DM (the D-value), neutral detergent fibre (NDF), and water-soluble carbohydrates (WSC). Next-generation hyperspectral cameras in visible-near-infrared (VNIR, 400–1000 nm; 224 bands) and shortwave-infrared (SWIR; 900–1700 nm; 224 bands) spectral ranges were used, and they were compared with commonly used RGB and VNIR multispectral cameras. The implemented machine-learning framework identified the most informative predictors of various parameters, and estimation models were then built using a random forest (RF) algorithm for each camera and its combinations. The results indicated accurate estimations; the best normalised root-mean-square errors (NRMSE) were 8.40% for the quantity parameters, and the best NRMSEs for the quality parameters were 7.44% for Ncont, 1% for D-value, 1.24% for NDF, and 12.02% for WSC. The hyperspectral datasets provided the best results, whereas the worst accuracies were obtained using the crop height model and RGB data. The integration of the VNIR and SWIR hyperspectral cameras generally provided the highest accuracies. This study showed for the first time the performance of novel SWIR range hyperspectral UAS cameras in agricultural application.

24 March 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
JKJere Kaivosoja
Jere Kaivosoja
JHJuho Hautsalo
Juho Hautsalo
JHJaakko Heikkinen
Jaakko Heikkinen
LHLea Hiltunen
Lea Hiltunen
PRPentti Ruuttunen
Pentti Ruuttunen
JSJukka Salonen
Jukka Salonen
The development of UAV (unmanned aerial vehicle) imaging technologies for precision farming applications is rapid, and new studies are published frequently. In cases where measurements are based on aerial imaging, there is the need to have ground truth or reference data in order to develop reliable applications. However, in several precision farming use cases such as pests, weeds, and diseases detection, the reference data can be subjective or relatively difficult to capture. Furthermore, the collection of reference data is usually laborious and time consuming. It also appears that it is difficult to develop generalisable solutions for these areas. This review studies previous research related to pests, weeds, and diseases detection and mapping using UAV imaging in the precision farming context, underpinning the applied reference measurement techniques. The majority of the reviewed studies utilised subjective visual observations of UAV images, and only a few applied in situ measurements. The conclusion of the review is that there is a lack of quantitative and repeatable reference data measurement solutions in the areas of mapping pests, weeds, and diseases. In addition, the results that the studies present should be reflected in the applied references. An option in the future approach could be the use of synthetic data as reference.

3 June 2022 in Remote Sensing
Verified
Journal Article
Open access
PDF file
KKKirsi Karila
Kirsi Karila
RORaquel Alves De Oliveira
Raquel Alves De Oliveira
JEJohannes Ek
Johannes Ek
JKJere Kaivosoja
Jere Kaivosoja
NKNiko Koivumäki
Niko Koivumäki
EHEija Honkavaara
Eija Honkavaara
The objective of this study is to investigate the potential of novel neural network architectures for measuring the quality and quantity parameters of silage grass swards, using drone RGB and hyperspectral images (HSI), and compare the results with the random forest (RF) method and handcrafted features. The parameters included fresh and dry biomass (FY, DMY), the digestibility of organic matter in dry matter (D-value), neutral detergent fiber (NDF), indigestible neutral detergent fiber (iNDF), water-soluble carbohydrates (WSC), nitrogen concentration (Ncont) and nitrogen uptake (NU); datasets from spring and summer growth were used. Deep pre-trained neural network architectures, the VGG16 and the Vision Transformer (ViT), and simple 2D and 3D convolutional neural networks (CNN) were studied. In most cases, the neural networks outperformed RF. The normalized root-mean-square errors (NRMSE) of the best models were for FY 19% (2104 kg/ha), DMY 21% (512 kg DM/ha), D-value 1.2% (8.6 g/kg DM), iNDF 12% (5.1 g/kg DM), NDF 1.1% (6.2 g/kg DM), WSC 10% (10.5 g/kg DM), Ncont 9% (2 g N/kg DM), and NU 22% (11.9 N kg/ha) using independent test dataset. The RGB data provided good results, particularly for the FY, DMY, WSC and NU. The HSI datasets provided advantages for some parameters. The ViT and VGG provided the best results with the RGB data, whereas the simple 3D-CNN was the most consistent with the HSI data.