Roman Sobotka

Dr. Roman Sobotka

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2012 in Current Opinion in Plant Biology
Verified
Journal Article
Closed access
JKJosef Komenda
Josef Komenda
RSRoman Sobotka
Roman Sobotka
PNPeter Nixon
Peter Nixon

23 February 2015 in Nature Chemical Biology
Verified
Journal Article
Closed access
HSHristina Staleva
Hristina Staleva
JKJosef Komenda
Josef Komenda
MSMahendra K Shukla
Mahendra K Shukla
VŠVáclav Šlouf
Václav Šlouf
RKRadek Kana
Radek Kana
RSRoman Sobotka
Roman Sobotka

1 November 2016 in Current Biology
Verified
Journal Article
Closed access
AKAlexander Klotz
Alexander Klotz
JGJens Georg
Jens Georg
LBLenka Bučinská
Lenka Bučinská
SWSatoru Watanabe
Satoru Watanabe
VRViktoria Reimann
Viktoria Reimann
Karl ForchhammerKarl Forchhammer
Karl Forchhammer

26 March 2021 in Science
Verified
Journal Article
Closed access
PDF file
SBSteffen Breinlinger
Steffen Breinlinger
TPTabitha J. Phillips
Tabitha J. Phillips
BHBrigette N. Haram
Brigette N. Haram
JMJan Mares
Jan Mares
JYJosé A. Martínez Yerena
José A. Martínez Yerena
SWSusan B. Wilde
Susan B. Wilde
A lethal combination: Although many human activities have clear negative effects on the natural world, there are also unforeseen consequences. Bald eagle mass death events in the southeastern United States may be one such downstream effect of human activity. After considerable effort, Breinlinger et al. identified the cause of these events as an insidious combination of factors. Colonization of waterways by an invasive, introduced plant provided a substrate for the growth of a previously unidentified cyanobacterium. Exposure of this cyanobacterium to bromide, typically anthropogenic in origin, resulted in the production of a neurotoxin that both causes neuropathy in animals that prey on the plants and also bioaccumulates to kill predators such as bald eagles. Science , this issue p. eaax9050

26 November 2008 in Plant Physiology
Verified
Journal Article
Open access
MDMarika Dobáková
Marika Dobáková
RSRoman Sobotka
Roman Sobotka
MTMartin Tichý
Martin Tichý
JKJosef Komenda
Josef Komenda
The role of the Psb28 protein in the structure and function of the photosystem II (PSII) complex has been studied in the cyanobacterium Synechocystis sp. PCC 6803. The protein was localized in the membrane fraction and, whereas most of the protein was detected as an unassembled protein, a small portion was found in the PSII core complex lacking the CP43 antenna (RC47). The association of Psb28 with RC47 was further confirmed by preferential isolation of RC47 from the strain containing a histidine-tagged derivative of Psb28 using nickel-affinity chromatography. However, the affinity-purified fraction also contained a small amount of the unassembled PSII inner antenna CP47 bound to Psb28-histidine, indicating a structural relationship between Psb28 and CP47. A psb28 deletion mutant exhibited slower autotrophic growth than wild type, although the absence of Psb28 did not affect the functional properties of PSII. The mutant showed accelerated turnover of the D1 protein, faster PSII repair, and a decrease in the cellular content of PSI. Radioactive labeling revealed a limitation in the synthesis of both CP47 and the PSI subunits PsaA/PsaB in the absence of Psb28. The mutant cells contained a high level of magnesium protoporphyrin IX methylester, a decreased level of protochlorophyllide, and released large quantities of protoporphyrin IX into the medium, indicating inhibition of chlorophyll (Chl) biosynthesis at the cyclization step yielding the isocyclic ring E. Overall, our results show the importance of Psb28 for synthesis of Chls and/or apoproteins of Chl-binding proteins CP47 and PsaA/PsaB.

1 March 2014 in The Plant Cell
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Journal Article
Open access
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JKJana Knoppová
Jana Knoppová
RSRoman Sobotka
Roman Sobotka
MTMartin Tichý
Martin Tichý
JYJianfeng Yu
Jianfeng Yu
PKPeter Konik
Peter Konik
JKJosef Komenda
Josef Komenda
Efficient assembly and repair of the oxygen-evolving photosystem II (PSII) complex is vital for maintaining photosynthetic activity in plants, algae, and cyanobacteria. How chlorophyll is delivered to PSII during assembly and how vulnerable assembly complexes are protected from photodamage are unknown. Here, we identify a chlorophyll and β-carotene binding protein complex in the cyanobacterium Synechocystis PCC 6803 important for formation of the D1/D2 reaction center assembly complex. It is composed of putative short-chain dehydrogenase/reductase Ycf39, encoded by the slr0399 gene, and two members of the high-light-inducible protein (Hlip) family, HliC and HliD, which are small membrane proteins related to the light-harvesting chlorophyll binding complexes found in plants. Perturbed chlorophyll recycling in a Ycf39-null mutant and copurification of chlorophyll synthase and unassembled D1 with the Ycf39-Hlip complex indicate a role in the delivery of chlorophyll to newly synthesized D1. Sequence similarities suggest the presence of a related complex in chloroplasts.