Jan Mareš

Dr. Jan Mareš


Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
24 October 2015 in BioMedical Engineering OnLine
Verified
Journal Article
Open access
PDF file
OŤOndřej Ťupa
Ondřej Ťupa
Ales ProchazkaAles Prochazka
Ales Prochazka
OVOldřich Vyšata
Oldřich Vyšata
MSMartin Schätz
Martin Schätz
JMJan Mareš
Jan Mareš
VMVladimír Mařík
Vladimír Mařík
Analysis of gait features provides important information during the treatment of neurological disorders, including Parkinson’s disease. It is also used to observe the effects of medication and rehabilitation. The methodology presented in this paper enables the detection of selected gait attributes by Microsoft (MS) Kinect image and depth sensors to track movements in three-dimensional space. The experimental part of the paper is devoted to the study of three sets of individuals: 18 patients with Parkinson’s disease, 18 healthy aged-matched individuals, and 15 students. The methodological part of the paper includes the use of digital signal-processing methods for rejecting gross data-acquisition errors, segmenting video frames, and extracting gait features. The proposed algorithm describes methods for estimating the leg length, normalised average stride length (SL), and gait velocity (GV) of the individuals in the given sets using MS Kinect data. The main objective of this work involves the recognition of selected gait disorders in both the clinical and everyday settings. The results obtained include an evaluation of leg lengths, with a mean difference of 0.004 m in the complete set of 51 individuals studied, and of the gait features of patients with Parkinson’s disease (SL: 0.38 m, GV: 0.61 m/s) and an age-matched reference set (SL: 0.54 m, GV: 0.81 m/s). Combining both features allowed for the use of neural networks to classify and evaluate the selectivity, specificity, and accuracy. The achieved accuracy was 97.2 %, which suggests the potential use of MS Kinect image and depth sensors for these applications. Discussion points include the possibility of using the MS Kinect sensors as inexpensive replacements for complex multi-camera systems and treadmill walking in gait-feature detection for the recognition of selected gait disorders.

22 February 2021 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Ondrej RozinekOndrej Rozinek
Ondrej Rozinek
JMJan Mareš
Jan Mareš
We introduce a new mathematical basis for similarity space. For the first time, we describe the relationship between distance and similarity from set theory. Then, we derive generally valid relations for the conversion between similarity and a metric and vice versa. We present a general solution for the normalization of a given similarity space or metric space. The derived solutions lead to many already used similarity and distance functions, and combine them into a unified theory. The Jaccard coefficient, Tanimoto coefficient, Steinhaus distance, Ruzicka similarity, Gaussian similarity, edit distance and edit similarity satisfy this relationship, which verifies our fundamental theory.

9 June 2022 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Mohsen ShayesteganMohsen Shayestegan
Mohsen Shayestegan
JKJan Kohout
Jan Kohout
KŠKarel Štícha
Karel Štícha
JMJan Mareš
Jan Mareš
In this paper, we designed a methodology to classify facial nerve function after head and neck surgery. It is important to be able to observe the rehabilitation process objectively after a specific brain surgery, when patients are often affected by face palsy. The dataset that is used for classification problems in this study only contains 236 measurements of 127 patients of complex observations using the most commonly used House–Brackmann (HB) scale, which is based on the subjective opinion of the physician. Although there are several traditional evaluation methods for measuring facial paralysis, they still suffer from ignoring facial movement information. This plays an important role in the analysis of facial paralysis and limits the selection of useful facial features for the evaluation of facial paralysis. In this paper, we present a triple-path convolutional neural network (TPCNN) to evaluate the problem of mimetic muscle rehabilitation, which is observed by a Kinect stereovision camera. A system consisting of three modules for facial landmark measure computation and facial paralysis classification based on a parallel convolutional neural network structure is used to quantitatively assess the classification of facial nerve paralysis by considering facial features based on the region and the temporal variation of facial landmark sequences. The proposed deep network analyzes both the global and local facial movement features of a patient’s face. These extracted high-level representations are then fused for the final evaluation of facial paralysis. The experimental results have verified the better performance of TPCNN compared to state-of-the-art deep learning networks.

24 December 2013 in Medical & Biological Engineering & Computing
Verified
Journal Article
Closed access
PDF file
Ales ProchazkaAles Prochazka
Ales Prochazka
SVSaeed Vaseghi
Saeed Vaseghi
MYMohammadreza Yadollahi
Mohammadreza Yadollahi
OŤOndřej Ťupa
Ondřej Ťupa
JMJan Mareš
Jan Mareš
OVOldřich Vyšata
Oldřich Vyšata

6 June 2023 in International Journal of Computational Intelligence Systems
Verified
Journal Article
Open access
PDF file
Mohsen ShayesteganMohsen Shayestegan
Mohsen Shayestegan
JKJan Kohout
Jan Kohout
KTKateřina Trnková
Kateřina Trnková
MCMartin Chovanec
Martin Chovanec
JMJan Mareš
Jan Mareš
Gait and motion stability analysis in gait dysfunction problems is a very interesting research area. Usually, patients who undergo vestibular deafferentation are affected by changes in their dynamic balance. Therefore, it is important both patients and physicians are able to monitor the progress of the so-called vestibular compensation to observe the rehabilitation process objectively. Currently, the quantification of their progress is highly dependent on the physician’s opinion. In this article, we designed a novel methodology to classify the gait disorders associated with unilateral vestibular deafferentation in patients undergoing vestibular schwannoma surgery (model of complete vestibular loss associated with imbalance due to vestibular nerve section and eventual labyrinthectomy). We present a dual-head attentional transformer-LSTM (DHAT-LSTM) to evaluate the problem of rehabilitation from gait dysfunction, which is observed by a Kinect. A system consisting of a key-point-RCNN detector is used to compute body landmark measures and evaluate gait dysfunction based on a DHAT-LSTM network. This structure is used to quantitatively assess gait classification by tracking skeletal features based on the temporal variation of feature sequences. The proposed deep network analyses the features of the patient’s movement. These extracted high-level representations are then fed to the final evaluation of gait dysfunction. The result analytically demonstrates its effectiveness in classification evaluation when used in conjunction with state-of-the-art pose estimation and feature extraction techniques. An accuracy greater than 81% was achieved for given sets of individuals using velocity-based, angle-based, and position features for both the whole body and the symmetric features of the body.

26 December 2020 in Sensors
Verified
Journal Article
Open access
PDF file
JKJan Kohout
Jan Kohout
LVL’udmila Verešpejová
L’udmila Verešpejová
PKPavel Kriz
Pavel Kriz
LCLenka Cervena
Lenka Cervena
KŠKarel Štícha
Karel Štícha
JMJan Mareš
Jan Mareš
An advanced statistical analysis of patients’ faces after specific surgical procedures that temporarily negatively affect the patient’s mimetic muscles is presented. For effective planning of rehabilitation, which typically lasts several months, it is crucial to correctly evaluate the improvement of the mimetic muscle function. The current way of describing the development of rehabilitation depends on the subjective opinion and expertise of the clinician and is not very precise concerning when the most common classification (House–Brackmann scale) is used. Our system is based on a stereovision Kinect camera and an advanced mathematical approach that objectively quantifies the mimetic muscle function independently of the clinician’s opinion. To effectively deal with the complexity of the 3D camera input data and uncertainty of the evaluation process, we designed a three-stage data-analytic procedure combining the calculation of indicators determined by clinicians with advanced statistical methods including functional data analysis and ordinal (multiple) logistic regression. We worked with a dataset of 93 distinct patients and 122 sets of measurements. In comparison to the classification with the House–Brackmann scale the developed system is able to automatically monitor reinnervation of mimetic muscles giving us opportunity to discriminate even small improvements during the course of rehabilitation.