Ester Papa

Prof. Ester Papa

QSAR Research Unit in Environmental Chemistry and Ecotoxicology, University of Insubria, Via J.H. Dunant 3, 21100 Varese, Italy
orcid

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 June 2013 in Journal of Computational Chemistry
Verified
Journal Article
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PGPaola Gramatica
Paola Gramatica
NCNicola Chirico
Nicola Chirico
Ester PapaEster Papa
Ester Papa
SCStefano Cassani
Stefano Cassani
SKSimona Kovarich
Simona Kovarich

26 August 2008 in Journal of Chemical Information and Modeling
Verified
Journal Article
Closed access
Igor V. TetkoIgor V. Tetko
Igor V. Tetko
ISIurii Sushko
Iurii Sushko
APAnil Kumar Pandey
Anil Kumar Pandey
HZHao Zhu
Hao Zhu
ATAlexander Tropsha
Alexander Tropsha
AVAlexandre Varnek
Alexandre Varnek

1 March 2008 in Journal of Chemical Information and Modeling
Verified
Journal Article
Open access
HZHao Zhu
Hao Zhu
ATAlexander Tropsha
Alexander Tropsha
DFDenis Fourches
Denis Fourches
AVAlexandre Varnek
Alexandre Varnek
Ester PapaEster Papa
Ester Papa
Igor V. TetkoIgor V. Tetko
Igor V. Tetko
Selecting most rigorous quantitative structure−activity relationship (QSAR) approaches is of great importance in the development of robust and predictive models of chemical toxicity. To address this issue in a systematic way, we have formed an international virtual collaboratory consisting of six independent groups with shared interests in computational chemical toxicology. We have compiled an aqueous toxicity data set containing 983 unique compounds tested in the same laboratory over a decade against Tetrahymena pyriformis. A modeling set including 644 compounds was selected randomly from the original set and distributed to all groups that used their own QSAR tools for model development. The remaining 339 compounds in the original set (external set I) as well as 110 additional compounds (external set II) published recently by the same laboratory (after this computational study was already in progress) were used as two independent validation sets to assess the external predictive power of individual models. In total, our virtual collaboratory has developed 15 different types of QSAR models of aquatic toxicity for the training set. The internal prediction accuracy for the modeling set ranged from 0.76 to 0.93 as measured by the leave-one-out cross-validation correlation coefficient (Qabs2). The prediction accuracy for the external validation sets I and II ranged from 0.71 to 0.85 (linear regression coefficient RabsI2) and from 0.38 to 0.83 (linear regression coefficient RabsII2), respectively. The use of an applicability domain threshold implemented in most models generally improved the external prediction accuracy but at the same time led to a decrease in chemical space coverage. Finally, several consensus models were developed by averaging the predicted aquatic toxicity for every compound using all 15 models, with or without taking into account their respective applicability domains. We find that consensus models afford higher prediction accuracy for the external validation data sets with the highest space coverage as compared to individual constituent models. Our studies prove the power of a collaborative and consensual approach to QSAR model development. The best validated models of aquatic toxicity developed by our collaboratory (both individual and consensus) can be used as reliable computational predictors of aquatic toxicity and are available from any of the participating laboratories.

1 March 2007 in Journal of Molecular Graphics and Modelling
Verified
Journal Article
Closed access
PGPaola Gramatica
Paola Gramatica
EGElisa Giani
Elisa Giani
Ester PapaEster Papa
Ester Papa

19 November 2012 in Molecular Informatics
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Journal Article
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PGPaola Gramatica
Paola Gramatica
SCStefano Cassani
Stefano Cassani
PRPartha Pratim Roy
Partha Pratim Roy
SKSimona Kovarich
Simona Kovarich
CYChun Wei Yap
Chun Wei Yap
Ester PapaEster Papa
Ester Papa

3 August 2004 in Journal of Chemical Information and Computer Sciences
Verified
Journal Article
Closed access
PGPaola Gramatica
Paola Gramatica
PPPamela Pilutti
Pamela Pilutti
Ester PapaEster Papa
Ester Papa