Gianni Cesareni

Gianni Cesareni

orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 November 2013 in Nucleic Acids Research
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Journal Article
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SOSandra Orchard
Sandra Orchard
MAMais Ammari
Mais Ammari
BABruno Aranda
Bruno Aranda
LBLionel Breuza
Lionel Breuza
LBLeonardo Briganti
Leonardo Briganti
HHHenning Hermjakob
Henning Hermjakob
IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capable of supporting both IMEx- and MIMIx-level curation. This tool is now utilized by multiple additional curation teams, all of whom annotate data directly into the IntAct database. Members of the IntAct team supply appropriate levels of training, perform quality control on entries and take responsibility for long-term data maintenance. Recently, the MINT and IntAct databases decided to merge their separate efforts to make optimal use of limited developer resources and maximize the curation output. All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset. Both IntAct and MINT are active contributors to the IMEx consortium (http://www.imexconsortium.org).

29 November 2006 in Nucleic Acids Research
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ACAndrew Chatr-Aryamontri
Andrew Chatr-Aryamontri
ACArnaud Ceol
Arnaud Ceol
LPLuisa Montecchi Palazzi
Luisa Montecchi Palazzi
GNGiuliano Nardelli
Giuliano Nardelli
VSVicky Schneider
Vicky Schneider
GCGianni Cesareni
Gianni Cesareni
The Molecular INTeraction database (MINT, Author Webpage) aims at storing, in a structured format, information about molecular interactions (MIs) by extracting experimental details from work published in peer-reviewed journals. At present the MINT team focuses the curation work on physical interactions between proteins. Genetic or computationally inferred interactions are not included in the database. Over the past four years MINT has undergone extensive revision. The new version of MINT is based on a completely remodeled database structure, which offers more efficient data exploration and analysis, and is characterized by entries with a richer annotation. Over the past few years the number of curated physical interactions has soared to over 95 000. The whole dataset can be freely accessed online in both interactive and batch modes through web-based interfaces and an FTP server. MINT now includes, as an integrated addition, HomoMINT, a database of interactions between human proteins inferred from experiments with ortholog proteins in model organisms (Author Webpage).

30 July 2013 in Nature Methods
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ACAlberto Calderone
Alberto Calderone
LCLuisa Castagnoli
Luisa Castagnoli
GCGianni Cesareni
Gianni Cesareni
Systems-level approaches require access to comprehensive\ud genome-wide and proteome-wide databases. A comprehensive\ud resource that archives all published protein-protein interactions\ud (PPIs) is not available. In fact, primary PPI databases capture\ud only a fraction of published data

29 May 2014 in Nature Methods
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HHHeiko Horn
Heiko Horn
ESErwin M Schoof
Erwin M Schoof
JKJinho Kim
Jinho Kim
XRXavier Robin
Xavier Robin
MMMartin L Miller
Martin L Miller
RLRune Linding
Rune Linding

27 January 2005 in The EMBO Journal
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MRMario Rossi
Mario Rossi
VLVincenzo De Laurenzi
Vincenzo De Laurenzi
EMEliana Munarriz
Eliana Munarriz
DGDouglas R Green
Douglas R Green
YLYun‐Cai Liu
Yun‐Cai Liu
GMGerry Melino
Gerry Melino
P73, a member of the p53 family of transcription factors, is upregulated in response to DNA damage, inducing cell cycle arrest and apoptosis. Besides indications that this p73 response is post‐transcriptional, little is known about the underlying molecular mechanisms of p73 protein degradation. Ubiquitination and proteasomal‐dependent degradation of p53 are regulated by its transcriptional target MDM2. However, unlike p53, p73 binds to, but is not degraded by, MDM2. Here we describe the binding of p73 to Itch, a Hect ubiquitin–protein ligase. Itch selectively binds and ubiquitinates p73 but not p53; this results in the rapid proteasome‐dependent degradation of p73. Upon DNA damage Itch itself is downregulated, allowing p73 protein levels to rise and thus interfere with p73 function. In conclusion, we have identified a key mechanism in the control of p73 protein levels both in normal as well as in stress conditions.

21 May 2012 in FEBS Letters
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Journal Article
Open access
FSFrancesca Sacco
Francesca Sacco
LPLivia Perfetto
Livia Perfetto
LCLuisa Castagnoli
Luisa Castagnoli
GCGianni Cesareni
Gianni Cesareni
The concerted activities of kinases and phosphatases modulate the phosphorylation levels of proteins, lipids and carbohydrates in eukaryotic cells. Despite considerable effort, we are still missing a holistic picture representing, at a proteome level, the functional relationships between kinases, phosphatases and their substrates. Here we focus on phosphatases and we review and integrate the available information that helps to place the members of the protein phosphatase superfamilies into the human protein interaction network. In addition we show how protein interaction domains and motifs, either covalently linked to the phosphatase domain or in regulatory/adaptor subunits, play a prominent role in substrate selection.