Saima Zafar

Dr. Saima Zafar

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 October 2016 in Nature Protocols
Verified
Journal Article
Closed access
MSMatthias Schmitz
Matthias Schmitz
MCMaria Cramm
Maria Cramm
Franc LlorensFranc Llorens
Franc Llorens
DMDominik Müller-Cramm
Dominik Müller-Cramm
SCSteven Collins
Steven Collins
IZInga Zerr
Inga Zerr

25 February 2019 in Annals of Neurology
Verified
Journal Article
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NCNiccolò Candelise
Niccolò Candelise
MSMatthias Schmitz
Matthias Schmitz
Franc LlorensFranc Llorens
Franc Llorens
AVAnna Villar‐Piqué
Anna Villar‐Piqué
MCMaria Cramm
Maria Cramm
Inga ZerrInga Zerr
Inga Zerr

9 May 2014 in Molecular Neurobiology
Verified
Journal Article
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MCMaria Cramm
Maria Cramm
MSMatthias Schmitz
Matthias Schmitz
AKAndré Karch
André Karch
SZSaima Zafar
Saima Zafar
DVDaniela Varges
Daniela Varges
IZInga Zerr
Inga Zerr
The development of in vitro amplification systems allows detecting femtomolar amounts of prion protein scrapie (PrPSc) in human cerebrospinal fluid (CSF). We performed a CSF study to determine the effects of prion disease type, codon 129 genotype, PrPSc type, and other disease-related factors on the real-time quaking-induced conversion (RT-QuIC) response. We analyzed times to 10,000 relative fluorescence units, areas under the curve and the signal maximum of RT-QuIC response as seeding parameters of interest. Interestingly, type of prion disease (sporadic vs. genetic) and the PRNP mutation (E200K vs. V210I and FFI), codon 129 genotype, and PrPSc type affected RT-QuIC response. In genetic forms, type of mutation showed the strongest effect on the observed outcome variables. In sporadic CJD, MM1 patients displayed a higher RT-QuIC signal maximum compared to MV1 and VV1. Age and gender were not associated with RT-QuIC signal, but patients with a short disease course showed a higher seeding efficiency of the RT-QuIC response. This study demonstrated that PrPSc characteristics in the CSF of human prion disease patients are associated with disease subtypes and rate of decline as defined by disease duration.

1 January 2014 in Emerging Infectious Diseases
Verified
Journal Article
Open access
JDJean-Yves Douet
Jean-Yves Douet
SZSaima Zafar
Saima Zafar
APArmand Perret-Liaudet
Armand Perret-Liaudet
CLCaroline Lacroux
Caroline Lacroux
SLSéverine Lugan
Séverine Lugan
OAOlivier Andreoletti
Olivier Andreoletti
We report the presence of infectivity in erythrocytes, leukocytes, and plasma of 1 person with variant Creutzfeldt-Jakob disease and in the plasma of 2 in 4 persons whose tests were positive for sporadic Creutzfeldt-Jakob disease. The measured infectivity levels were comparable to those reported in various animals with transmissible spongiform encephalopathies.

23 June 2020 in Acta Neuropathologica
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Journal Article
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NYNeelam Younas
Neelam Younas
SZSaima Zafar
Saima Zafar
MSMohsin Shafiq
Mohsin Shafiq
ANAneeqa Noor
Aneeqa Noor
ASAnna Siegert
Anna Siegert
Inga ZerrInga Zerr
Inga Zerr
Dysfunctional RNA-binding proteins (RBPs) have been implicated in several neurodegenerative disorders. Recently, this paradigm of RBPs has been extended to pathophysiology of Alzheimer’s disease (AD). Here, we identified disease subtype specific variations in the RNA-binding proteome (RBPome) of sporadic AD (spAD), rapidly progressive AD (rpAD), and sporadic Creutzfeldt Jakob disease (sCJD), as well as control cases using RNA pull-down assay in combination with proteomics. We show that one of these identified proteins, splicing factor proline and glutamine rich (SFPQ), is downregulated in the post-mortem brains of rapidly progressive AD patients, sCJD patients and 3xTg mice brain at terminal stage of the disease. In contrast, the expression of SFPQ was elevated at early stage of the disease in the 3xTg mice, and in vitro after oxidative stress stimuli. Strikingly, in rpAD patients’ brains SFPQ showed a significant dislocation from the nucleus and cytoplasmic colocalization with TIA-1. Furthermore, in rpAD brain lesions, SFPQ and p-tau showed extranuclear colocalization. Of note, association between SFPQ and tau-oligomers in rpAD brains suggests a possible role of SFPQ in oligomerization and subsequent misfolding of tau protein. In line with the findings from the human brain, our in vitro study showed that SFPQ is recruited into TIA-1-positive stress granules (SGs) after oxidative stress induction, and colocalizes with tau/p-tau in these granules, providing a possible mechanism of SFPQ dislocation through pathological SGs. Furthermore, the expression of human tau in vitro induced significant downregulation of SFPQ, suggesting a causal role of tau in the downregulation of SFPQ. The findings from the current study indicate that the dysregulation and dislocation of SFPQ, the subsequent DNA-related anomalies and aberrant dynamics of SGs in association with pathological tau represents a critical pathway which contributes to rapid progression of AD.

17 January 2020 in Translational Neurodegeneration
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Journal Article
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CNCandelise Niccolò
Candelise Niccolò
MSMatthias Schmitz
Matthias Schmitz
KTKatrin Thüne
Katrin Thüne
MCMaria Cramm
Maria Cramm
Alberto RábanoAlberto Rábano
Alberto Rábano
Inga ZerrInga Zerr
Inga Zerr
Background: α-Synuclein is a small soluble protein, whose physiological function in the healthy brain is poorly understood. Intracellular inclusions of α-synuclein, referred to as Lewy bodies (LBs), are pathological hallmarks of α-synucleinopathies, such as Parkinson’s disease (PD) or dementia with Lewy bodies (DLB). Main body: Understanding of the molecular basis as well as the factors or conditions promoting α-synuclein misfolding and aggregation is an important step towards the comprehension of pathological mechanism of α-synucleinopathies and for the development of efficient therapeutic strategies. Based on the conversion and aggregation mechanism of α-synuclein, novel diagnostic tests, such as protein misfolding seeded conversion assays, e.g. the real-time quaking-induced conversion (RT-QuIC), had been developed. In diagnostics, α-synuclein RT-QuIC exhibits a specificity between 82 and 100% while the sensitivity varies between 70 and 100% among different laboratories. In addition, the α-synuclein RT-QuIC can be used to study the α-synuclein-seeding-characteristics of different α-synucleinopathies and to differentiate between DLB and PD. Conclusion: The variable diagnostic accuracy of current α-synuclein RT-QuIC occurs due to different protocols, cohorts and material etc.. An impact of micro-environmental factors on the α-synuclein aggregation and conversion process and the occurrence and detection of differential misfolded α-synuclein types or strains might underpin the clinical heterogeneity of α-synucleinopathies.