Oocyte quality is known to be a major cause of infertility in repeat-breeder (RB) and heat-stressed dairy cows. However, the mechanisms by which RB oocytes become less capable of supporting embryo development remain largely unknown. Thus, the aim of this study was to investigate whether the decreased oocyte competence of RB cows during summer is associated with an altered gene expression profile and a decrease in mitochondrial DNA (mtDNA) copy number. Therefore, oocytes collected from heifers (H), non-RB cows in peak lactation (PL) and RB cows were used to evaluate mtDNA amounts as well as the expression levels of genes associated with the mitochondria (MT-CO1, NRF1, POLG, POLG2, PPARGC1A and TFAM), apoptosis (BAX, BCL2 and ITM2B) and oocyte maturation (BMP15, FGF8, FGF10, FGF16, FGF17 and GDF9). The oocytes retrieved from RB cows during winter contained over eight times more mtDNA than those retrieved from RB cows during summer. They also contained significantly less mtDNA than oocytes retrieved from H and PL cows during summer. Moreover, the expression of mitochondria- (NRF1, POLG, POLG2, PPARGC1A and TFAM) and apoptosis-related (BAX and ITM2B) genes, as well as of GDF9, in RB oocytes collected during summer was significantly greater than that in oocytes collected from H and PL cows during the same season. In oocytes from H and PL cows, the expression levels of these genes were lower in those collected during summer compared with winter, but this difference was not observed in oocytes collected from RBs. Altogether, these data provide evidence of altered gene expression and reduced mtDNA copy number in the oocytes collected from RB cows during summer. This indicates a loss of fertility in RB cows during summer, which might be caused by a possible mitochondrial dysfunction associated with a greater chance of oocytes to undergo apoptosis.