Marina P Kolomytseva

Dr. Marina P Kolomytseva

orcid

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2010 in Journal of Structural Biology
Verified
Journal Article
Closed access
IMIrene Matera
Irene Matera
MFMarta Ferraroni
Marta Ferraroni
MKMarina P Kolomytseva
Marina P Kolomytseva
LGLudmila Golovleva
Ludmila Golovleva
ASAndrea Scozzafava
Andrea Scozzafava
FBFabrizio Briganti
Fabrizio Briganti

1 June 2004 in Journal of Biological Chemistry
Verified
Journal Article
Open access
MFMarta Ferraroni
Marta Ferraroni
ISInna P. Solyanikova
Inna P. Solyanikova
MKMarina P Kolomytseva
Marina P Kolomytseva
ASAndrea Scozzafava
Andrea Scozzafava
LGLudmila Golovleva
Ludmila Golovleva
FBFabrizio Briganti
Fabrizio Briganti
The crystal structure of the 4-chlorocatechol 1,2-dioxygenase from the Gram-positive bacterium Rhodococcus opacus (erythropolis) 1CP, a Fe(III) ion-containing enzyme involved in the aerobic biodegradation of chloroaromatic compounds, has been solved by multiple wavelength anomalous dispersion using the weak anomalous signal of the two catalytic irons (1 Fe/257 amino acids) and refined at a 2.5 A resolution (R(free) 28.7%; R factor 21.4%). The analysis of the structure and its comparison with the structure of catechol 1,2-dioxygenase from Acinetobacter calcoaceticus ADP1 (Ac 1,2-CTD) highlight significant differences between these enzymes. The general topology of the present enzyme comprises two catalytic domains (one for each subunit) related by a noncrystallographic 2-fold axis and separated by a common alpha-helical zipper motif consisting of five N-terminal helices from each subunit; furthermore the C-terminal tail is shortened significantly with respect to the known Ac 1,2-CTD. The presence of two phospholipids binding in a hydrophobic tunnel along the dimer axis is shown here to be a common feature for this class of enzyme. The active site cavity presents several dissimilarities with respect to the known catechol-cleaving enzyme. The catalytic nonheme iron(III) ion is bound to the side chains of Tyr-134, Tyr-169, His-194, and His-196, and a cocrystallized benzoate ion, bound to the metal center, reveals details on a novel mode of binding of bidentate inhibitors and a distinctive hydrogen bond network with the surrounding ligands. Among the amino acid residues expected to interact with substrates, several are different from the corresponding analogs of Ac 1,2-CTD: Asp-52, Ala-53, Gly-76, Phe-78, and Cys-224; in addition, regions of largely conserved amino acid residues in the catalytic cleft show different shapes resulting from several substantial backbone and side chain shifts. The present structure is the first of intradiol dioxygenases that specifically catalyze the cleavage of chlorocatechols, key intermediates in the aerobic catabolism of toxic chloroaromatics.

1 December 2008 in Journal of Applied Microbiology
Verified
Journal Article
Open access
PDF file
ACA. Chernykh
A. Chernykh
NMN. Myasoedova
N. Myasoedova
MKMarina P Kolomytseva
Marina P Kolomytseva
MFM. Ferraroni
M. Ferraroni
FBF. Briganti
F. Briganti
LGL. Golovleva
L. Golovleva
To isolate and characterize the laccase isoforms from S. ochraceum 1833 - a new active producer of high extracellular laccase activity. Three laccase isoforms (laccases I, II and III) with 57.5, 59.5 and 63 kDa molecular masses respectively were purified from S. ochraceum 1833 and in contrast to the known laccases had strongly pronounced absorption at 611 nm with molar extinction coefficients ranging from 7170 to 7830 mol(-1) l cm(-1). All isoforms showed maximal activity with ABTS at low pH (

20 March 2009 in Applied Biochemistry and Microbiology
Verified
Journal Article
Closed access
PDF file
NLN. A. Leneva
N. A. Leneva
MKMarina P Kolomytseva
Marina P Kolomytseva
BBB. P. Baskunov
B. P. Baskunov
LGL. A. Golovleva
L. A. Golovleva
The cells of Rhodococcus opacus 412 and R. rhodnii135 were adapted to phenanthrene and anthracene on a solid mineral medium. Preliminary adaptation of the strains accelerated the metabolism of...

1 July 2006 in Journal of Molecular Biology
Verified
Journal Article
Closed access
MFMarta Ferraroni
Marta Ferraroni
MKMarina P Kolomytseva
Marina P Kolomytseva
ISInna P. Solyanikova
Inna P. Solyanikova
ASAndrea Scozzafava
Andrea Scozzafava
LGLudmila A. Golovleva
Ludmila A. Golovleva
FBFabrizio Briganti
Fabrizio Briganti

6 July 2007 in Biotechnology Journal
Verified
Journal Article
Closed access
PDF file
MKMarina P Kolomytseva
Marina P Kolomytseva
BBBoris P. Baskunov
Boris P. Baskunov
LGLudmila Alexeevna Golovleva
Ludmila Alexeevna Golovleva