Alex Jones

Dr. Alex Jones

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 January 2021 in Quantum Reports
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YKYoungchan Kim
Youngchan Kim
FBFederico Bertagna
Federico Bertagna
EDEdeline M. D’souza
Edeline M. D’souza
DHDerren Heyes
Derren Heyes
LJLinus O. Johannissen
Linus O. Johannissen
JMJohnjoe Mcfadden
Johnjoe Mcfadden
Understanding the rules of life is one of the most important scientific endeavours and has revolutionised both biology and biotechnology. Remarkable advances in observation techniques allow us to investigate a broad range of complex and dynamic biological processes in which living systems could exploit quantum behaviour to enhance and regulate biological functions. Recent evidence suggests that these non-trivial quantum mechanical effects may play a crucial role in maintaining the non-equilibrium state of biomolecular systems. Quantum biology is the study of such quantum aspects of living systems. In this review, we summarise the latest progress in quantum biology, including the areas of enzyme-catalysed reactions, photosynthesis, spin-dependent reactions, DNA, fluorescent proteins, and ion channels. Many of these results are expected to be fundamental building blocks towards understanding the rules of life.

12 August 2015 in Nature Communications
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Journal Article
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RKRoger J. Kutta
Roger J. Kutta
SHSamantha J. O. Hardman
Samantha J. O. Hardman
LJLinus O. Johannissen
Linus O. Johannissen
BBBruno Bellina
Bruno Bellina
HMHanan L. Messiha
Hanan L. Messiha
AJAlex Jones
Alex Jones
The coenzyme B12-dependent photoreceptor protein, CarH, is a bacterial transcriptional regulator that controls the biosynthesis of carotenoids in response to light. On binding of coenzyme B12 the monomeric apoprotein forms tetramers in the dark, which bind operator DNA thus blocking transcription. Under illumination the CarH tetramer dissociates, weakening its affinity for DNA and allowing transcription. The mechanism by which this occurs is unknown. Here we describe the photochemistry in CarH that ultimately triggers tetramer dissociation; it proceeds via a cob(III)alamin intermediate, which then forms a stable adduct with the protein. This pathway is without precedent and our data suggest it is independent of the radical chemistry common to both coenzyme B12 enzymology and its known photochemistry. It provides a mechanistic foundation for the emerging field of B12 photobiology and will serve to inform the development of a new class of optogenetic tool for the control of gene expression.

20 March 2013 in Nature
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CLColin Levy
Colin Levy
BZBrian D. Zoltowski
Brian D. Zoltowski
AJAlex Jones
Alex Jones
AVAnand T. Vaidya
Anand T. Vaidya
DTDeniz Top
Deniz Top
DLDavid Leys
David Leys
Arising from B. D. Zoltowski et al. Nature 480, 396–399 (2011)10.1038/nature10618 Recently, we determined the X-ray crystal structure of full-length cryptochrome from Drosophila1. Here we report an improved model of the Drosophila cryptochrome (dCRY) structure that corrects errors in the original coordinates (Protein Data Bank (PDB) accession 3TVS). Further refinement of the structure, with automated rebuilding algorithms in Phenix2 followed by manual building, indicated that a model of dCRY could be produced with excellent refinement statistics without taking into account the non-merohedral twinning originally reported (Table 1). Table 1 Data collection and phasing statistics Full size table

20 March 2017 in Scientific Reports
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RKRoger J. Kutta
Roger J. Kutta
NANataliya Archipowa
Nataliya Archipowa
LJLinus O. Johannissen
Linus O. Johannissen
AJAlex Jones
Alex Jones
NSNigel Scrutton
Nigel Scrutton
All cryptochromes are currently classified as flavoproteins. In animals their best-described role is as components of the circadian clock. This circadian function is variable, and can be either light-dependent or -independent; the molecular origin of this difference is unknown. Type I animal cryptochromes are photoreceptors that entrain an organism’s clock to its environment, whereas Type II (including mammals) regulate circadian timing in a light-independent manner. Here, we reveal that, in contrast to Type I, Type II animal cryptochromes lack the structural features to securely bind the photoactive flavin cofactor. We provide a molecular basis for the distinct circadian roles of different animal cryptochromes, which also has significant implications for the putative role of Type II cryptochromes in animal photomagnetoreception.

10 April 2018 in ACS Synthetic Biology
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Closed access
CCClaire Chatelle
Claire Chatelle
RORocio Ochoa-Fernandez
Rocio Ochoa-Fernandez
RERaphael Engesser
Raphael Engesser
NSNils Schneider
Nils Schneider
HBHannes M. Beyer
Hannes M. Beyer
WWWilfried Weber
Wilfried Weber

23 July 2014 in Scientific Reports
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RMRichard Marley
Richard Marley
CGCarlo N. G. Giachello
Carlo N. G. Giachello
NSNigel Scrutton
Nigel Scrutton
RBRichard Baines
Richard Baines
AJAlex Jones
Alex Jones
The mechanisms that facilitate animal magnetoreception have both fascinated and confounded scientists for decades and its precise biophysical origin remains unclear. Among the proposed primary magnetic sensors is the flavoprotein, cryptochrome, which is thought to provide geomagnetic information via a quantum effect in a light-initiated radical pair reaction. Despite recent advances in the radical pair model of magnetoreception from theoretical, molecular and animal behaviour studies, very little is known of a possible signal transduction mechanism. We report a substantial effect of magnetic field exposure on seizure response in Drosophila larvae. The effect is dependent on cryptochrome, the presence and wavelength of light and is blocked by prior ingestion of typical antiepileptic drugs. These data are consistent with a magnetically-sensitive, photochemical radical pair reaction in cryptochrome that alters levels of neuronal excitation and represent a vital step forward in our understanding of the signal transduction mechanism involved in animal magnetoreception.