Edward Farmer

Dr. Edward Farmer


Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 April 2013 in Annual Review of Plant Biology
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Journal Article
Closed access
EFEdward Farmer
Edward Farmer
MMMartin J. Mueller
Martin J. Mueller
Nonenzymatic lipid oxidation is usually viewed as deleterious. But if this is the case, then why does it occur so frequently in cells? Here we review the mechanisms of membrane peroxidation and examine the genesis of reactive electrophile species (RES). Recent evidence suggests that during stress, both lipid peroxidation and RES generation can benefit cells. New results from genetic approaches support a model in which entire membranes can act as supramolecular sinks for singlet oxygen, the predominant reactive oxygen species (ROS) in plastids. RES reprogram gene expression through a class II TGA transcription factor module as well as other, unknown signaling pathways. We propose a framework to explain how RES signaling promotes cell “REScue” by stimulating the expression of genes encoding detoxification functions, cell cycle regulators, and chaperones. The majority of the known biological activities of oxygenated lipids (oxylipins) in plants are mediated either by jasmonate perception or through RES signaling networks.

1 August 2007 in The Plant Cell
Verified
Journal Article
Open access
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YYYuanxin Yan
Yuanxin Yan
SSStépHanie Stolz
StépHanie Stolz
ACAurore ChétElat
Aurore ChétElat
PRPhilippe Reymond
Philippe Reymond
MPMarco Pagni
Marco Pagni
EFEdward Farmer
Edward Farmer
Wounding plant tissues initiates large-scale changes in transcription coupled to growth arrest, allowing resource diversion for defense. These processes are mediated in large part by the potent lipid regulator jasmonic acid (JA). Genes selected from a list of wound-inducible transcripts regulated by the jasmonate pathway were overexpressed in Arabidopsis thaliana, and the transgenic plants were then assayed for sensitivity to methyl jasmonate (MeJA). When grown in the presence of MeJA, the roots of plants overexpressing a gene of unknown function were longer than those of wild-type plants. When transcript levels for this gene, which we named JASMONATE-ASSOCIATED1 (JAS1), were reduced by RNA interference, the plants showed increased sensitivity to MeJA and growth was inhibited. These gain- and loss-of-function assays suggest that this gene acts as a repressor of JA-inhibited growth. An alternative transcript from the gene encoding a second protein isoform with a longer C terminus failed to repress jasmonate sensitivity. This identified a conserved C-terminal sequence in JAS1 and related genes, all of which also contain Zim motifs and many of which are jasmonate-regulated. Both forms of JAS1 were found to localize to the nucleus in transient expression assays. Physiological tests of growth responses after wounding were consistent with the fact that JAS1 is a repressor of JA-regulated growth retardation.

1 November 2004 in The Plant Cell
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Journal Article
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PRPhilippe Reymond
Philippe Reymond
NBNatacha Bodenhausen
Natacha Bodenhausen
RPRemco M.P. Van Poecke
Remco M.P. Van Poecke
VKVenkatesh Krishnamurthy
Venkatesh Krishnamurthy
MDMarcel Dicke
Marcel Dicke
EFEdward Farmer
Edward Farmer
Transcript patterns elicited in response to attack reveal, at the molecular level, how plants respond to aggressors. These patterns are fashioned both by inflicted physical damage as well as by biological components displayed or released by the attacker. Different types of attacking organisms might therefore be expected to elicit different transcription programs in the host. Using a large-scale DNA microarray, we characterized gene expression in damaged as well as in distal Arabidopsis thaliana leaves in response to the specialist insect, Pieris rapae. More than 100 insect-responsive genes potentially involved in defense were identified, including genes involved in pathogenesis, indole glucosinolate metabolism, detoxification and cell survival, and signal transduction. Of these 114 genes, 111 were induced in Pieris feeding, and only three were repressed. Expression patterns in distal leaves were markedly similar to those of local leaves. Analysis of wild-type and jasmonate mutant plants, coupled with jasmonate treatment, showed that between 67 and 84% of Pieris-regulated gene expression was controlled, totally or in part, by the jasmonate pathway. This was correlated with increased larval performance on the coronatine insensitive1 glabrous1 (coi1-1 gl1) mutant. Independent mutations in COI1 and GL1 led to a faster larval weight gain, but the gl1 mutation had relatively little effect on the expression of the insect-responsive genes examined. Finally, we compared transcript patterns in Arabidopis in response to larvae of the specialist P. rapae and to a generalist insect, Spodoptera littoralis. Surprisingly, given the complex nature of insect salivary components and reported differences between species, almost identical transcript profiles were observed. This study also provides a robustly characterized gene set for the further investigation of plant–insect interaction.

18 September 2018 in Proceedings of the National Academy of Sciences
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Journal Article
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CNChi Tam Nguyen
Chi Tam Nguyen
AKAndrzej Kurenda
Andrzej Kurenda
SSStéphanie Stolz
Stéphanie Stolz
ACAurore Chételat
Aurore Chételat
EFEdward Farmer
Edward Farmer
The identity of the cell files necessary for the leaf-to-leaf transmission of wound signals plants has been debated for decades. In Arabidopsis, wounding initiates the glutamate receptor-like (GLR)–dependent propagation of membrane depolarizations that lead to defense gene activation. Using a vein extraction procedure we found pools of GLR-fusion proteins in endomembranes in phloem sieve elements and/or in xylem contact cells. Strikingly, only double mutants that eliminated GLRs from both of these spatially separated cell types strongly attenuated leaf-to-leaf electrical signaling. glr3.3 mutants were also compromised in their defense against herbivores. Since wounding is known to cause increases in cytosolic calcium, we monitored electrical signals and Ca2+ transients simultaneously. This revealed that wound-induced membrane depolarizations in the wild-type preceded cytosolic Ca2+ maxima. The axial and radial distributions of calcium fluxes were differentially affected in each glr mutant. Resolving a debate over which cell types are necessary for electrical signaling between leaves, we show that phloem sieve elements and xylem contact cells function together in this process. Significance Numerous modes of long-distance electrical signaling exist in nature. The best known of these, axonal conduction, requires one primary cell population, i.e., neurons. In contrast, the cell types that mediate leaf-to-leaf electrical signaling in wounded plants have not been defined rigorously. Using genetic approaches, we find that two distinct populations of cells in the vasculature matrix are needed to perform this function. Surprisingly, these cells do not contact each other directly. As we further defined the plant wound response, we found that wound-induced membrane depolarizations preceded large intravasculature calcium fluxes. We reveal a two-cell-type mode of electrical signaling in leaves and discuss parallels and differences in electrical signaling outside the plant kingdom.

1 August 2007 in Current Opinion in Plant Biology
Verified
Journal Article
Closed access
EFEdward Farmer
Edward Farmer
CDCéline Davoine
Céline Davoine

1 December 2009 in Journal of Biological Chemistry
Verified
Journal Article
Open access
GGGaetan Glauser
Gaetan Glauser
LDLucie Dubugnon
Lucie Dubugnon
SMSeyed A.R. Mousavi
Seyed A.R. Mousavi
SRSerge Rudaz
Serge Rudaz
JWJean-Luc Wolfender
Jean-Luc Wolfender
EFEdward Farmer
Edward Farmer
The wound response prohormone jasmonic acid (JA) accumulates rapidly in tissues both proximal and distal to injury sites in plants. Using quantitative liquid chromatography-mass spectrometry after flash freezing of tissues, we found that JA accumulated within 30 s of injury in wounded Arabidopsis leaves (p = 3.5 e(-7)). JA augmentation distal to wounds was strongest in unwounded leaves with direct vascular connections to wounded leaves wherein JA levels increased significantly within 120 s of wounding (p = 0.00027). This gave conservative and statistically robust temporal boundaries for the average velocity of the long distance signal leading to distal JA accumulation in unwounded leaves of 3.4-4.5 cm min(-1). Like JA, transcripts of the JA synthesis gene LIPOXYGENASE2 (LOX2) and the jasmonate response gene JAZ10.3 also accumulated to higher levels in directly interconnected leaves than in indirectly connected leaves. JA accumulation in a lox2-1 mutant plant was initiated rapidly after wounding then slowed progressively compared with the wild type (WT). Despite this, JAZ10.3 expression in the two genotypes was similar. Free cyclopentenone jasmonate levels were similar in both resting WT and lox2-1. In contrast, bound cyclopentenone jasmonates (arabidopsides) were far lower in lox2-1 than in the WT. The major roles of LOX2 are to generate arabidopsides and the large levels of JA that accumulate proximal to the wound. LOX2 is not essential for some of the most rapid events elicited by wounding.