Gyujin Heo

Mr. Gyujin Heo

Interdisciplinary Program in Bioinformatics, Seoul National University
orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 July 2025 in Nature Medicine
Verified
Journal Article
Open access
MAMuhammad Ali
Muhammad Ali
BEBuddhiprabha Erabadda
Buddhiprabha Erabadda
YCYike Chen
Yike Chen
YXYing Xu
Ying Xu
KGKatherine Gong
Katherine Gong
CCCarlos Cruchaga
Carlos Cruchaga
Neurodegenerative diseases (NDs), such as Alzheimer’s disease (AD), Parkinson’s disease (PD) and frontotemporal dementia (FTD), exhibit distinct yet overlapping pathological mechanisms. Leveraging large-scale plasma proteomics data from the Global Neurodegeneration Proteomics Consortium, we analyzed 10,527 plasma samples (1,936 AD, 525 PD, 163 FTD, 1,638 dementia and 6,265 controls) to identify disease-specific and shared proteins across NDs. We identified 5,187 proteins significantly associated with AD, 3,748 with PD and 2,380 with FTD that revealed both common and divergent proteomic signatures, which were confirmed by multiple analytical approaches and orthogonal validation. PD and FTD showed the highest overlap (r 2 = 0.44) and AD and PD the least (r 2 = 0.04). Immune system, glycolysis, and matrisome-related pathways were enriched across all NDs, while disease-specific pathways included apoptotic processes in AD, endoplasmic reticulum–phagosome impairment in PD and platelet dysregulation in FTD. Network analysis identified key upstream regulators (RPS27A in AD, IRAK4 in PD and MAPK1 in FTD) potentially driving these proteomic changes. These findings reveal distinct and shared mechanisms across NDs, highlighting potential regulatory proteins and pathways for diagnostic and therapeutic strategies in neurodegeneration.

20 May 2025 in Nature Aging
Verified
Journal Article
Closed access
GHGyujin Heo
Gyujin Heo
YXYing Xu
Ying Xu
EWErming Wang
Erming Wang
MAMuhammad Ali
Muhammad Ali
HOHamilton Se-Hwee Oh
Hamilton Se-Hwee Oh
CCCarlos Cruchaga
Carlos Cruchaga

KHKim Hakyong
Kim Hakyong
CACATHERINE APIO
CATHERINE APIO
YKYeonghyeon KO
Yeonghyeon KO
KHKyulhee Han
Kyulhee Han
TGTaewan Goo
Taewan Goo
Taesung ParkTaesung Park
Taesung Park
The outbreak of the novel COVID-19, declared a global pandemic by WHO, is the most serious public health threat seen in terms of respiratory viruses since the 1918 H1N1 influenza pandemic. It is surprising that the total number of COVID-19 confirmed cases and the number of deaths has varied greatly across countries. Such great variations are caused by age population, health conditions, travel, economy, and environmental factors. Here, we investigated which national factors (life expectancy, aging index, human development index, percentage of malnourished people in the population, extreme poverty, economic ability, health policy, population, age distributions, etc.) influenced the spread of COVID-19 through systematic statistical analysis. First, we employed segmented growth curve models (GCMs) to model the cumulative confirmed cases for 134 countries from 1 January to 31 August 2020 (logistic and Gompertz). Thus, each country’s COVID-19 spread pattern was summarized into three growth-curve model parameters. Secondly, we investigated the relationship of selected 31 national factors (from KOSIS and Our World in Data) to these GCM parameters. Our analysis showed that with time, the parameters were influenced by different factors; for example, the parameter related to the maximum number of predicted cumulative confirmed cases was greatly influenced by the total population size, as expected. The other parameter related to the rate of spread of COVID-19 was influenced by aging index, cardiovascular death rate, extreme poverty, median age, percentage of population aged 65 or 70 and older, and so forth. We hope that with their consideration of a country’s resources and population dynamics that our results will help in making informed decisions with the most impact against similar infectious diseases.

GHGyujin Heo
Gyujin Heo
CACATHERINE APIO
CATHERINE APIO
KHKyulhee Han
Kyulhee Han
TGTaewan Goo
Taewan Goo
HCHye Won Chung
Hye Won Chung
Taesung ParkTaesung Park
Taesung Park
Since the outbreak of novel SARS-COV-2, each country has implemented diverse policies to mitigate and suppress the spread of the virus. However, no systematic evaluation of these policies in their alleviation of the pandemic has been done. We investigate the impact of five indices derived from 12 policies in the Oxford COVID-19 Government Response Tracker dataset and the Korean government’s index, which is the social distancing level implemented by the Korean government in response to the changing pandemic situation. We employed segmented Poisson model for this analysis. In conclusion, health and the Korean government indices are most consistently effective (with negative coefficients), while the restriction and stringency indexes are mainly effective with lagging (1~10 days), as intuitively daily confirmed cases of a given day is affected by the policies implemented days before, which shows that a period of time is required before the impact of some policies can be observed. The health index demonstrates the importance of public information campaign, testing policy and contact tracing, while the government index shows the importance of social distancing guidelines in mitigating the spread of the virus. These results imply the important roles of these polices in mitigation of the spread of COVID-19 disease.

31 March 2021 in Genomics & Informatics
Verified
Journal Article
Open access
PDF file
TGTaewan Goo
Taewan Goo
CACATHERINE APIO
CATHERINE APIO
GHGyujin Heo
Gyujin Heo
DLDoeun Lee
Doeun Lee
JLJong Hyeok Lee
Jong Hyeok Lee
Taesung ParkTaesung Park
Taesung Park
For the novel coronavirus disease 2019 (COVID-19), predictive modeling, in the literature, uses broadly susceptible exposed infected recoverd (SEIR)/SIR, agent-based, curve-fitting models. Governments and legislative bodies rely on insights from prediction models to suggest new policies and to assess the effectiveness of enforced policies. Therefore, access to accurate outbreak prediction models is essential to obtain insights into the likely spread and consequences of infectious diseases. The objective of this study is to predict the future COVID-19 situation of Korea. Here, we employed 5 models for this analysis; SEIR, local linear regression (LLR), negative binomial (NB) regression, segment Poisson, deep-learning based long short-term memory models (LSTM) and tree based gradient boosting machine (GBM). After prediction, model performance comparison was evelauated using relative mean squared errors (RMSE) for two sets of train (January 20, 2020‒December 31, 2020 and January 20, 2020‒January 31, 2021) and testing data (January 1, 2021‒February 28, 2021 and February 1, 2021‒February 28, 2021) . Except for segmented Poisson model, the other models predicted a decline in the daily confirmed cases in the country for the coming future. RMSE values' comparison showed that LLR, GBM, SEIR, NB, and LSTM respectively, performed well in the forecasting of the pandemic situation of the country. A good understanding of the epidemic dynamics would greatly enhance the control and prevention of COVID-19 and other infectious diseases. Therefore, with increasing daily confirmed cases since this year, these results could help in the pandemic response by informing decisions about planning, resource allocation, and decision concerning social distancing policies.

14 October 2025 in Nature Aging
Verified
Journal Article
Closed access
PDF file
DSDahun Seo
Dahun Seo
ADAnh N. Do
Anh N. Do
GHGyujin Heo
Gyujin Heo
JKJiseon Kwon
Jiseon Kwon
SSSoomin Song
Soomin Song
YSYun Ju Sung
Yun Ju Sung