Jan Dudak

Dr. Jan Dudak

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Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 December 2020 in Proceedings Of The Royal Society B-Biological Sciences
Verified
Journal Article
Open access
Petra FrýdlováPetra Frýdlová
Petra Frýdlová
JMJana Mrzílková
Jana Mrzílková
MŠMartin Šeremeta
Martin Šeremeta
JKJan Křemen
Jan Křemen
JDJan Dudak
Jan Dudak
DFDaniel Frynta
Daniel Frynta
Body growth is typically thought to be indeterminate in ectothermic vertebrates. Indeed, until recently, this growth pattern was considered to be ubiquitous in ectotherms. Our recent observations of a complete growth plate cartilage (GPC) resorption, a reliable indicator of arrested skeletal growth, in many species of lizards clearly reject the ubiquity of indeterminate growth in reptiles and raise the question about the ancestral state of the growth pattern. Using X-ray micro-computed tomography (µCT), here we examined GPCs of long bones in three basally branching clades of squamate reptiles, namely in Gekkota, Scincoidea and Lacertoidea. A complete loss of GPC, indicating skeletal growth arrest, was the predominant finding. Using a dataset of 164 species representing all major clades of lizards and the tuataras, we traced the evolution of determinate growth on the phylogenetic tree of Lepidosauria. The reconstruction of character states suggests that determinate growth is ancestral for the squamate reptiles (Squamata) and remains common in the majority of lizard lineages, while extended (potentially indeterminate) adult growth evolved several times within squamates. Although traditionally associated with endotherms, determinate growth is coupled with ectothermy in this lineage. These findings combined with existing literature suggest that determinate growth predominates in both extant and extinct amniotes.

12 December 2019 in Scientific Reports
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Journal Article
Open access
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Petra FrýdlováPetra Frýdlová
Petra Frýdlová
JMJana Mrzílková
Jana Mrzílková
MŠMartin Šeremeta
Martin Šeremeta
JKJan Křemen
Jan Křemen
JDJan Dudak
Jan Dudak
PZPetr Zach
Petr Zach
Squamate reptiles are considered to exhibit indeterminate growth. Nevertheless, current literature disputes the available definitions of this growth type, presents new theoretical models, and questions its universality in cold-blooded vertebrates. We have followed up on our previous research employing micro-CT to explore growth plate cartilage (GPC) in the epiphysis of long bones, which is responsible for longitudinal skeletal growth by the endochondral ossification process. We focused on numerous and highly diversified group of the Iguania clade comprising Acrodonta (agamas and chameleons) and Pleurodonta (“iguanas”). We recorded the absence of GPC in most of the examined adult Pleurodonta specimens and interpret it as an irreversible arrest of skeletal growth. This finding clearly rejects the universality of indeterminate growth in lizards. On the other hand, we found apparent GPC preservation in most of the adult specimens belonging to Acrodonta. This suggests a preserved ability to continue body growth throughout most of their life. We discuss the uncovered disparity between Acrodonta and Pleurodonta and emphasize the importance of GPC degradation timing.

1 January 2020 in Palaeontologia Electronica
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Journal Article
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ZHZuzana Heřmanová
Zuzana Heřmanová
JBJana Bruthansová
Jana Bruthansová
KHKatarína Holcová
Katarína Holcová
RMRadek Mikuláš
Radek Mikuláš
MVMartina Kočová Veselská
Martina Kočová Veselská
MVMartin Vohník
Martin Vohník
Benefits and limits of x-ray micro-computed tomography for visualization of colonization and bioerosion of shelled organisms

1 December 2017 in Journal of Instrumentation
Verified
Journal Article
Closed access
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JKJ. Karch
J. Karch
JDJan Dudak
Jan Dudak
JŽJ. Žemlička
J. Žemlička
DVDaniel Vavřík
Daniel Vavřík
IKIvana Kumpova
Ivana Kumpova
PTP. Trtík
P. Trtík
Computed tomography provides 3D information of inner structures of investigated objects. The obtained information is, however, strongly dependent on the used radiation type. It is known that as X-rays interact with electron cloud and neutrons with atomic nucleus, the obtained data often provide different contrast of sample structures. In this work we present a set of comparative radiographic and CT measurements of rare fossil plant samples using X-rays and thermal neutrons. The X-ray measurements were performed using large area photon counting detectors Timepix at IEAP CTU in Prague and Perkin Elmer flat-panel detector at Center of Excellence Telč. The neutron CT measurement was carried out at Paul Scherrer Institute using BOA beam-line. Furthermore, neutron radiography of fossil samples, provided by National Museum, were performed using a large-area Timepix detector with a neutron-sensitive converting 6LiF layer at Research Centre Rez, Czech Republic. The obtained results show different capabilities of both imaging approaches. While X-ray micro-CT provides very high resolution and enables visualization of fine cracks or small cavities in the samples neutron imaging provides high contrast of morphological structures of fossil plant samples, where X-ray imaging provides insufficient contrast.

1 January 2017 in Journal of Instrumentation
Verified
Journal Article
Closed access
JDJan Dudak
Jan Dudak
JZJ. Zemlicka
J. Zemlicka
JKJ. Karch
J. Karch
ZHZ. Hermanova
Z. Hermanova
JKJ. Kvacek
J. Kvacek
FKF. Krejci
F. Krejci
Photon counting detectors Timepix are known for their unique properties enabling X-ray imaging with extremely high contrast-to-noise ratio. Their applicability has been recently further improved since a dedicated technique for assembling large area Timepix detector arrays was introduced. Despite the fact that the sensitive area of Timepix detectors has been significantly increased, the pixel pitch is kept unchanged (55 microns). This value is much larger compared to widely used and popular X-ray imaging cameras utilizing scintillation crystals and CCD-based read-out. On the other hand, photon counting detectors provide steeper point-spread function. Therefore, with given effective pixel size of an acquired radiography, Timepix detectors provide higher spatial resolution than X-ray cameras with scintillation-based devices unless the image is affected by penumbral blur. In this paper we take an advance of steep PSF of photon counting detectors and test the possibility to improve the quality of computed tomography reconstruction using finer sampling of reconstructed voxel space. The achieved results are presented in comparison with data acquired under the same conditions using a commercially available state-of-the-art CCD X-ray camera.

22 February 2025 in Journal of Morphology
Verified
Journal Article
Open access
Petra FrýdlováPetra Frýdlová
Petra Frýdlová
JDJan Dudak
Jan Dudak
VTVeronika Tymlová
Veronika Tymlová
JŽJan Žemlička
Jan Žemlička
JMJiří Moravec
Jiří Moravec
DFDaniel Frynta
Daniel Frynta
Dermal armour, consisting of bony dermal structures known as osteoderms (ODs), is widespread in squamate reptiles. However, in some limbless taxa such as snakes, ODs are rare, probably due to a trade‐off between mechanical protection and the demands of locomotion and consumption of large prey. Recent findings of ODs restricted to the distal body regions of sand boas ( Eryx , Erycidae) challenge this paradigm, suggesting they provide passive mechanical protection against aggressive prey without significantly impairing locomotion. Building on these findings, we have continued the search and identified three additional snake species that have well‐developed caudal ODs, including the first‐ever discovery of ODs in shield‐tailed snakes (Uropeltidae). In these fossorial species, which are characterised by their unique tail morphology, ecological adaptations and colouration, the ODs at the tail tip may serve as passive protection against predators. However, an alternative role in locomotion or occasional phragmosis cannot be ruled out. In the Javelin sand boa ( Eryx jaculus ), the ODs are hypothesised to function as a mechanical defence against aggressive prey. These results highlight the functional and evolutionary plasticity of ODs and emphasise the urgent need for further studies on their specific role and adaptive significance in the ecology and evolution of snakes.