The precise segmentation of brain tumor images is a vital step towards accurate diagnosis and effective treatment of brain tumors. Magnetic Resonance Imaging (MRI) can generate brain images without tissue damage or skull artifacts, providing important discriminant information for clinicians in the study of brain tumors and other brain diseases. In this paper, we survey the field of brain tumor MRI images segmentation. Firstly, we present the commonly used databases. Then, we summarize multi-modal brain tumor MRI image segmentation methods, which are divided into three categories: conventional segmentation methods, segmentation methods based on classical machine learning methods, and segmentation methods based on deep learning methods. The principles, structures, advantages and disadvantages of typical algorithms in each method are summarized. Finally, we analyze the challenges, and suggest a prospect for future development trends.
23 March 2022 in Computers in Biology and Medicine
Multimodal medical images can be used in a multifaceted approach to resolve a wide range of medical diagnostic problems. However, these images are generally difficult to obtain due to various limitations, such as cost of capture and patient safety. Medical image synthesis is used in various tasks to obtain better results. Recently, various studies have attempted to use generative adversarial networks for missing modality image synthesis, making good progress. In this study, we propose a generator based on a combination of transformer network and a convolutional neural network (CNN). The proposed method can combine the advantages of transformers and CNNs to promote a better detail effect. The network is designed for positron emission tomography (PET) to computer tomography synthesis, which can be used for PET attenuation correction. We also experimented on two datasets for magnetic resonance T1- to T2-weighted image synthesis. Based on qualitative and quantitative analyses, our proposed method outperforms the existing methods.
16 May 2024 in ACM Transactions on Multimedia Computing, Communications, and Applications
Accurate and automated segmentation of lesions in brain MRI scans is crucial in diagnostics and treatment planning. Despite the significant achievements of existing approaches, they often require substantial computational resources and fail to fully exploit the synergy between low-level and high-level features. To address these challenges, we introduce the Separable Spatial Convolutional Network (SSCN), an innovative model that refines the U-Net architecture to achieve efficient brain tumor segmentation with minimal computational cost. SSCN integrates the PocketNet paradigm and replaces standard convolutions with depthwise separable convolutions, resulting in a significant reduction in parameters and computational load. Additionally, our feature complementary module enhances the interaction between features across the encoder-decoder structure, facilitating the integration of multi-scale features while maintaining low computational demands. The model also incorporates a separable spatial attention mechanism, enhancing its capability to discern spatial details. Empirical validations on standard datasets demonstrate the effectiveness of our proposed model, especially in segmenting small and medium-sized tumors, with only 0.27M parameters and 3.68 GFlops. Our code is available at https://github.com/zzpr/SSCN .
1 January 2021 in Computational Intelligence and Neuroscience
Magnetic resonance (MR) images often suffer from random noise pollution during image acquisition and transmission, which impairs disease diagnosis by doctors or automated systems. In recent years, many noise removal algorithms with impressive performances have been proposed. In this work, inspired by the idea of deep learning, we propose a denoising method named 3D‐Parallel‐RicianNet, which will combine global and local information to remove noise in MR images. Specifically, we introduce a powerful dilated convolution residual (DCR) module to expand the receptive field of the network and to avoid the loss of global features. Then, to extract more local information and reduce the computational complexity, we design the depthwise separable convolution residual (DSCR) module to learn the channel and position information in the image, which not only reduces parameters dramatically but also improves the local denoising performance. In addition, a parallel network is constructed by fusing the features extracted from each DCR module and DSCR module to improve the efficiency and reduce the complexity for training a denoising model. Finally, a reconstruction (REC) module aims to construct the clean image through the obtained noise deviation and the given noisy image. Due to the lack of ground‐truth images in the real MR dataset, the performance of the proposed model was tested qualitatively and quantitatively on one simulated T1‐weighted MR image dataset and then expanded to four real datasets. The experimental results show that the proposed 3D‐Parallel‐RicianNet network achieves performance superior to that of several state‐of‐the‐art methods in terms of the peak signal‐to‐noise ratio, structural similarity index, and entropy metric. In particular, our method demonstrates powerful abilities in both noise suppression and structure preservation.