Oksana Ni

Dr. Oksana Ni


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 July 2020 in Antibiotics
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Svetlana RachinaSvetlana Rachina
Svetlana Rachina
YBYuliya Belkova
Yuliya Belkova
Roman KozlovRoman Kozlov
Roman Kozlov
AVAnn Versporten
Ann Versporten
IPInes Pauwels
Ines Pauwels
RGRussian Global-PPS Project Study Group
Russian Global-PPS Project Study Group
Antimicrobial resistance is one of the key issues limiting the successful treatment of infectious diseases and associated with adverse medical, social and economic consequences on a global scale. The present study aims to evaluate antimicrobials prescribing patterns and assess progress in quality indicators in Russian multidisciplinary hospitals using three repetitive point prevalence studies (PPSs) over 4 years (Global-PPS 2015, 2017 and 2018). Out of 13,595 patients from 21 hospitals surveyed over the three time points, 3542 (26.14%) received antimicrobials, predominantly third-generation cephalosporins (44.7% in 2015, 34.1% in 2017 and 41.8% in 2018). Compliance with the hospital antibiotic guidelines was 74.8%, 66.8% and 74.3%, respectively. Indication for treatment was recorded in 72.6%, 84.1% and 82.6%, while stop/review date was documented only in 40.5%, 46.5% and 61.1% of cases. Perioperative antibiotic prophylaxis exceeded 1 day in 92%, 84% and 81% of cases. Targeted therapy rate at all time points did not exceed 15.1%, treatment based on the biomarkers rate—19.9%. For the part of PPS-2017 and 2018 analyzed in dynamics, no prominent trends were noted. The results of the project provide the basis for the development of appropriate antimicrobial stewardship programs tailored according to local practices for each hospital in the project.

14 January 2025 in Epidemiology and Vaccinal Prevention
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Journal Article
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ONOksana Ni
Oksana Ni
BBB. Z. Belotserkovskiy
B. Z. Belotserkovskiy
AKAlexander N. Kruglov
Alexander N. Kruglov
MMM. I. Matyash
M. I. Matyash
ABA. O. Bykov
A. O. Bykov
DPD. N. Protsenko
D. N. Protsenko
Relevance. In the last decade, there has been an increase in the isolation of antibiotic-resistant microorganisms in community settings. Colonization and asymptomatic carriage of extended-spectrum beta-lactamase and carbapenemase producers can be a precursor to the development of an infectious process and a significant factor in the pathogenesis of healthcare-associated infections. Understanding the risk factors for community-acquired colonization with antibiotic-resistant microorganisms is necessary for targeted screening and timely implementation of measures to prevent the spread of resistance in hospitals.The aim. To determine significant risk factors for colonization with antibiotic-resistant gram-negative microorganisms and carriage of carbapenem resistance genes in patients admitted to a multidisciplinary hospital.Materials & Methods. A prospective single-center crosssectional study was conducted at the Moscow Multidisciplinary Clinical Center «Kommunarka» from 15.09.2022 to 15.08.2023. The study included 733 patients aged 18 to 94 years. Biological samples were taken from the rectum, upper and lower respiratory tract. The obtained samples were examined by real-time polymerase chain reaction (PCR) with hybridization-fluorescent detection of amplification products to identify carbapenemase genes and by culture method to determine colonization with carbapenemresistant bacteria. Identification of isolated microorganisms was performed using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), and antibiotic susceptibility was determined by the Kirby-Bauer disk diffusion method on Mueller-Hinton agar. The results of susceptibility testing were interpreted based on EUCAST v12.0, v13.0, and v13.1 criteria.Results. Carriage of carbapenemase genes was detected in 12.6% of patients admitted to the hospital, while colonization with carbapenem-resistant bacteria was found in 2.7%. In the majority of patients (66.7%), the rectum was the only site of gene carriage. However, only 18.1% of these patients showed rectal colonization with carbapenem-resistant bacteria. This discrepancy is likely due to the higher sensitivity of molecular genetic methods compared to culture-based techniques. From a clinical perspective, the detection of nucleic acids by PCR can serve as an equivalent to pathogen detection in biological material. Multivariate analysis identified 5 independent predictors of colonization: cytostatic therapy, transfer from another hospital, need for vasopressor support, antibiotic use in the previous 3 months, and male gender.Conclusion. The identified risk factors allow for the identification of a highrisk patient cohort for targeted screening, enabling timely administration of appropriate antibiotic therapy and implementation of measures to prevent the spread of carbapenem resistance in the hospital.

22 September 2018 in Research Results in Pharmacology
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RBRoman A. Bontsevich
Roman A. Bontsevich
TFTatiana S. Filinichenko
Tatiana S. Filinichenko
AGAnna Gavrilova
Anna Gavrilova
NGNatalia Y. Goncharova
Natalia Y. Goncharova
OMOlena V. Myronenko
Olena V. Myronenko
DODaniel K. Ofori
Daniel K. Ofori
Introduction. Community-acquired pneumonia (CAP) remains one of the most acute problems of bronchopulmonary pathology being the 4th in the mortality structure (after cardiovascular, cerebrovascular diseases and malignant neoplasms) and the 1st among all fatalities from infectious diseases. Thanks to the scientific progress achieved in the antibiotic therapy and vaccine prophylaxis, the death toll has decreased four times compared to its rate during the “pre-antibiotic era“. However, nowadays there is a steadily increasing trend in the pneumonia mortality rate in Russia. The only possible way to increase efficacy of CAP treatment is timely initiated rational antibiotic therapy, considering the possible etiologies, risk factors and the severity of the patient’s condition. Materials and methods. The article represents the results of anonymous prospective surveys within the framework of the KNOCAP multi-centered research project aimed at accessing the knowledge on the fundamental issues in diagnosis and treatment of community-acquired pneumonia. The survey involved 222 students in their fifth- and sixth years in medical institute from Belgorod, Dnepr (Dnipro), Voronezh, Kiev (Kyiv) and Saratov and 110 physicians from Krasnodar, Saratov, Belgorod and Dnepr. Results and discussion. According to the results of the survey, such levels of correct answers were given by doctors and students, respectively: the inadmissibility of antimicrobial therapy (AMT) delay in CAP - 82% and 59%; the main criterion for withholding AMT - 56% and 37%; “sequential therapy” - 61% and 59%. At the same time, only 24% of the students and 23% of the physicians surveyed correctly reported typical mistakes in the treatment of a non-severe CAP with 50% or more accuracy; and in case of initial treatment, the number of correct responses was less than 28% for students and 45% for doctors. Conclusion. The survey showed that both senior medical students majoring in Medical Care and general practitioners had a low level of knowledge in CAP treatment. Hence, curricula need to be adjusted both in medical universities and in health institutions for practitioners in order to inform them and, thus, improve the quality of their knowledge in this field.

22 February 2024 in Beneficial Microbes
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OIOlga Ignatyeva
Olga Ignatyeva
VGVladimir Gostev
Vladimir Gostev
ATAnastasiia Nikolaevna Taraskina
Anastasiia Nikolaevna Taraskina
ITIrina Tsvetkova
Irina Tsvetkova
PPP. Pavlova
P. Pavlova
SYSergey Yudin
Sergey Yudin
COVID-19 is caused by an airborne virus, SARS-CoV-2. The upper respiratory tract (URT) is, therefore, the first system to endure the attack. Inhabited by an assemblage of microbial communities, a healthy URT wards off the invasion. However, once invaded, it becomes destabilised, which could be crucial to the establishment and progression of the infection. We examined 696 URT samples collected from 285 COVID-19 patients at three time-points throughout their hospital stay and 100 URT samples from 100 healthy controls. We used 16S ribosomal RNA sequencing to evaluate the abundance of various bacterial taxa, α-diversity, and β-diversity of the URT microbiome. Ordinary least squares regression was used to establish associations between the variables, with age, sex, and antibiotics as covariates. The URT microbiome in the COVID-19 patients was distinctively different from that of healthy controls. In COVID-19 patients, the abundance of 16 genera was significantly reduced. A total of 47 genera were specific to patients, whereas only 2 were unique to controls. The URT samples collected at admission differed more from the control than from the samples collected at later stages of treatment. The following four genera originally depleted in the patients grew significantly by the end of treatment: Fusobacterium, Haemophilus, Neisseria, and Stenotrophomonas. Our findings strongly suggest that SARS-CoV-2 caused significant changes in the URT microbiome, including the emergence of numerous atypical taxa. These findings may indicate increased instability of the URT microbiome in COVID-19 patients. In the course of the treatment, the microbial composition of the URT of COVID-19 patients tended toward that of controls. These microbial changes may be interpreted as markers of recovery.

1 January 2024 in Clinical Microbiology and Antimicrobial Chemotherapy
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Journal Article
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ONOksana Ni
Oksana Ni
ESE.M. Shifman
E.M. Shifman
SYS.V. Yakovlev
S.V. Yakovlev
ABA.O. Bykov
A.O. Bykov
AGA.A. Gorbacheva
A.A. Gorbacheva
DPD.N. Protsenko
D.N. Protsenko
Objective. To investigate the prevalence of carbapenemase-encoding genes carriage in patients at hospital admission. Materials and Methods. The prospective single-center cross-sectional study was performed in Moscow Multidisciplinary Clinical Center «Kommunarka» from 15.09.2022 till 15.08.2023. Adult patients without signs of gastrointestinal, upper and lower respiratory tract infections were included to research at fist 24 hour after hospital admission. Rectal swab and oropharyngeal swab were collected from each patient. Additional lower respiratory tract samples were collected from patients who were undergoing mechanical ventilation. The collected samples were tested by polymerase chain reaction using AmpliSens reagent kits to identify crabapenemase-encoding genes: blaOXA-58, blaOXA-51, blaOXA-40, blaOXA-23, blaVIM, blaIMP, blaOXA-48, blaNDM and blaKPC. Results. A total of 737 patients aged 18 to 94 were included, 442 of them were females and 295 were males. Carriage of genes in at least one locus was found in 12.6% of patients. 70.9% of patients carried only one type of genes, but 16.1% carried two different types of genes and 12.9% carried from 3 to 6 different types of genes. Males were carriers more often, then females (18.3% and 8.6% respectively). The most common gene was blaOXA-48 (23.1%), followed by blaNDM (15.4%). Genes blaKPC and blaOXA-51 were detected with the same frequency (14.7%). The other genes were less common, from 0.6% (blaIMP) to 10.3% (blaOXA-51). Genes blaOXA-48, blaNDM and blaKPC were more common in rectal swabs, and blaOXA-58 and blaOXA-51 predominated in upper respiratory tract samples. In lower respiratory tract samples blaOXA-48, blaKPC and blaOXA-51 occurred with equal frequency. In ICU patients the prevalence of carriage was 35.1% compared to 8.5% among ward patients. The carriage rate was the highest among patients from therapeutic wards (17.5%) and the lowest in patients from hematology wards (3.0%). Conclusions. Our study is one of the first in Russia to evaluate the prevalence of community-acquired carriage of carbapenemase genes. The features we discovered have potential clinical significance and allow us to draw some conclusions for our center, but multicenter studies of a similar design are needed to identify general patterns.

24 June 2024 in CHILDREN INFECTIONS
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SDS. V. Dumova
S. V. Dumova
ИКИ. О. Кузьмина
И. О. Кузьмина
OCO. L. Chugunova
O. L. Chugunova
SZS. I. Zhogin
S. I. Zhogin
DLD. V. Lychagina
D. V. Lychagina
PSP. V. Shumilov
P. V. Shumilov
The article presents a case of early neonatal sepsis in a premature neonate caused by Streptococcus pneumoniae with the development of purulent meningitis, describes the diagnostic possibilities and features of treatment, as well as the outcome of this condition in the child. In the presented case the rapid increase of symptoms of meningo-encephalitis, slow sanation of liquor, despite the adequacy of the conducted therapy, attracts attention.