At the same time as the strong ambition to improve sustainability and the healthiness of food systems through a transition towards a more plant-based diet, climate change is increasing the risk of plant diseases. Consequently, mycotoxigenic fungi have become a food safety issue of major importance. A variety of strategies to suppress fungal growth in the pre- and postharvest stages of plant production have been established, and the potential of various biological methods has been assessed to ensure food safety. Of the various food microbes, lactic acid bacteria are known for their capacity to suppress the growth of toxigenic fungi and adsorb free mycotoxins. The current study showed that lactic acid fermentation could mitigate aflatoxin risk in plant-based foods through a reduction in free aflatoxin B1. In line with previous studies, in which Lactiplantibacillus plantarum (formerly Lactobacillus plantarum) was shown to reduce the level of free aflatoxin B1 in vitro, L. plantarum was shown to achieve up to a 90% reduction in free aflatoxin B1 in food fermentation. The results showed that traditional lactic acid fermentation, using L. plantarum as the starter strain, could be applied to mitigate aflatoxin B1 contamination risk in proteinaceous plant-based foodstuffs. In a wider context, fermentation using selected strains of lactic acid bacteria as starters could also enhance the availability of nutritious and safer food in terms of mycotoxin risk in low-income countries.

Mycotoxin incidence in forage may heavily affect the amount of toxins consumed by cattle. However, many studies have focused on mycotoxin occurrence in cereals and there are less studies of forages, particularly of grass silages. For determining the occurrence of mycotoxins in farm silages under Northern European conditions in Finland, 37 grass silage and 6 whole-crop cereal silage batches were analysed separately for surface, core and, if present, visibly mouldy spots. Mycotoxins were found in 92% of the samples. All mouldy samples contained mycotoxins. Beauvericin was the most common mycotoxin in grass silages and roquefortine C in whole-crop cereal silages. In mouldy samples, beauvericin, mycophenolic acid and roquefortine C were the most common mycotoxins in the grass silage and mycophenolic acid in the whole-crop cereal silage. Aflatoxins were not found in any of the samples. On average, all samples contained more than one type of mycotoxin. Concentrations of mycotoxins varied considerably from very low to very high values. The results of this survey indicate that silage-fed ruminants can be exposed to a broad range of mycotoxins. The absence of visible moulds does not always indicate mycotoxin-free feed. All moulded samples contained mycotoxins and some at very high concentrations, and they contained more different types of mycotoxins than samples without visible mould. Thus, feeding mouldy feeds to animals should be avoided.

Fusarium head blight (FHB) is an economically important plant disease. Some Fusarium species produce mycotoxins that cause food safety concerns for both humans and animals. One especially important mycotoxin-producing fungus causing FHB is Fusarium graminearum. However, Fusarium species form a disease complex where different Fusarium species co-occur in the infected cereals. Effective management strategies for FHB are needed. Development of the management tools requires information about the diversity and abundance of the whole Fusarium community. Molecular quantification assays for detecting individual Fusarium species and subgroups exist, but a method for the detection and quantification of the whole Fusarium group is still lacking. In this study, a new TaqMan-based qPCR method (FusE) targeting the Fusarium-specific elongation factor region (EF1α) was developed for the detection and quantification of Fusarium spp. The FusE method was proven as a sensitive method with a detection limit of 1 pg of Fusarium DNA. Fusarium abundance results from oat samples correlated significantly with deoxynivalenol (DON) toxin content. In addition, the whole Fusarium community in Finnish oat samples was characterized with a new metabarcoding method. A shift from F. culmorum to F. graminearum in FHB-infected oats has been detected in Europe, and the results of this study confirm that. These new molecular methods can be applied in the assessment of the Fusarium community and mycotoxin risk in cereals. Knowledge gained from the Fusarium community analyses can be applied in developing and selecting effective management strategies for FHB.

Large volumes of pesticides are applied every year to support agricultural production. The intensive use of pesticides affects soil quality and health, but soil surveys on pesticide residues are scarce, especially for northern Europe. We investigated the occurrence of 198 pesticide residues, including both banned and currently used substances in 148 field sites in Finland. Results highlight that pesticide residues are common in the agricultural soils of Finland. A least one residue was found in 82% of the soils, and of those 32% contained five or more residues. Maximum total residue concentration among the conventionally farmed soils was 3043 μg/kg, of which AMPA and glyphosate contributed the most. Pesticide residues were also found from organically farmed soils, although at 75-90% lower concentrations than in the conventionally farmed fields. Thus, despite the application rates of pesticides in Finland being generally much lower than in most parts of central and southern Europe, the total residue concentrations in the soils occurred at similar or at higher levels. We also established that AMPA and glyphosate residues in soil are significantly higher in fields with cereal dominated rotations than in grass dominated or cereal-grass rotations. However, risk analyses for individual substances indicated low ecological risk for most of the fields. Furthermore, the total ecological risk associated with the mixtures of residues was mostly low except for 21% of cereal dominated fields with medium risk. The results showed that the presence of mixtures of pesticide residues in soils is a rule rather than an exception also in boreal soils. In highly chemicalized modern agriculture, the follow-up of the residues of currently used pesticides in national and international soil monitoring programs is imperative to maintain soil quality and support sustainable environment policies.

Fusarium basal rot (FBR) of onion is a serious disease problem worldwide. The Fusarium species causing FBR can also produce mycotoxins that are potentially harmful to humans and animals. In this study, a multiple reaction monitoring technique with ultra-high-performance liquid chromatography–tandem mass spectrometry (MRM UHPLC-MS/MS) was developed and validated for onion matrix to study Fusarium mycotoxins in the harvested onions. This study was focused on fumonisins B₁, B₂, and B₃ (FB₁, FB₂, and FB₃), beauvericin (BEA), and moniliformin (MON), which are the main mycotoxins produced by Fusarium oxysporum and Fusarium proliferatum. In the in-house validated protocol, the onion samples were extracted with methanol:water (3:1) using magnetic stirring for 15 min. FBs and BEA were determined directly from the filtered extracts, whereas MON required sample concentration prior to analysis. No cleanup of extracts was needed prior to analysis. The target mycotoxins were separated on an Acquity UPLC system BEH C18 column with gradient elution. Mycotoxins were identified and quantified using ¹³C-FB₁ as internal standard. Minor matrix effect was compensated using multi-point matrix-matched calibration curves with uninfected onion sample. For the mycotoxins studied, a good linearity was obtained (R² ≥ 0.99) and the recoveries were in the range of 67–122%, with the highest standard deviation for MON, 22%. The limits of quantification were from 2.5 to 10 ng g⁻¹ in onion matrix. The method was successfully employed for the analysis of mycotoxins in harvested onions showing FBR symptoms and found to be infected with F. oxysporum and F. proliferatum.

Glyphosate [N-(phosphonomethyl) glycine] (GLY) adsorbs strongly in Finnish soils. A new method for GLY and its main degradation product, aminomethylphosphonic acid (AMPA) residues in clay soils (Protovertic Luvisol) was developed and validated. A new method was necessary because the previous one required laborious cleaning pre-treatments, and its recovery was quite poor (<40%–70%). In the new method, the earlier method's extraction solvent, 0.1 M potassium hydroxide (KOH), was replaced by more effective 0.6 M KOH. The old post-column high-performance liquid chromatography and fluorescence (HPLC-FLD) method was replaced by the ultra-high performance liquid chromatography–tandem mass spectrometry (UHPLC-MS/MS) method. Compounds were identified as their fluorenyl methyl chloroformate (FMOC) derivatives by a multiple reaction monitoring (MRM) technique and quantified by an internal standard method utilising multipoint matrix-matched calibration. Glufosinate-ammonium (GLUF) was used to monitor the effectiveness of extraction with good recovery (80–119%). All calibration curves were found to be linear (R² ≥ 0.98) in the studied calibration range (0.01–3.31 mg kg⁻¹ in fresh soil). The repeatability and reproducibility were 25% and 28% for GLY, and 20% and 24% for AMPA in real research soil samples. The method was effective throughout the calibration range in all the studied Finnish agricultural soils. • An improved method was created to analyse glyphosate (GLY) and AMPA in Finnish clay soil. • The challenge caused by strong GLY adsorption on soil was solved by using multipoint matrix-matched calibration curve samples which were prepared identically with the research samples. • The method performed well in all tested clay, loam and sandy loam soils.