The water movement research in irrigation districts is important for food production. Many hydrological models have been proposed to simulate the water movement on the regional scale, yet few of them have comprehensively considered processes in the irrigation districts. A novel physically based distributed model, the Irrigation Districts Model (IDM), was constructed in this study to address this problem. The model combined the 1D canal and ditch flow, the 1D soil water movement, the 2D groundwater movement, and the water interactions among these processes. It was calibrated and verified with two-year experimental data from Shahaoqu Sub-Irrigation Area in Hetao Irrigation District. The overall water balance error is 2.9% and 1.6% for the two years, respectively. The Nash–Sutcliffe efficiency coefficient (NSE) of water table depth and soil water content is 0.72 and 0.64 in the calibration year and 0.68 and 0.64 in the verification year. The results show good correspondence between the simulation and observation. It is practicable to apply the model in water movement research of irrigation districts.