Mycotoxigenic fungal pathogens Fusarium and Alternaria are a leading cause of loss in cereal production. On wheat-ears, they are confronted by bacterial antagonists such as pseudomonads. Studies on these groups’ interactions often neglect the infection process’s temporal aspects and the associated priority effects. In the present study, the focus was on how the first colonizer affects the subsequent ones. In a climate chamber experiment, wheat-ears were successively inoculated with two different strains (Alternaria tenuissima At625, Fusarium graminearum Fg23, or Pseudomonas simiae Ps9). Over three weeks, microbial abundances and mycotoxin concentrations were analyzed and visualized via Self Organizing Maps with Sammon Mapping (SOM-SM). All three strains revealed different characteristics and strategies to deal with co-inoculation: Fg23, as the first colonizer, suppressed the establishment of At625 and Ps9. Nevertheless, primary inoculation of At625 reduced all of the Fusarium toxins and stopped Ps9 from establishing. Ps9 showed priority effects in delaying and blocking the production of the fungal mycotoxins. The SOM-SM analysis visualized the competitive strengths: Fg23 ranked first, At625 second, Ps9 third. Our findings of species-specific priority effects in a natural environment and the role of the mycotoxins involved are relevant for developing biocontrol strategies.

Dispersal processes play an essential role in cereal diseases caused by phytopathogenic Fusarium. However, most empirical studies of Fusarium spore dispersal have focused on vertical transport by rain splash, while wind dispersal has been mostly neglected. Our objective was to determine the ability of Fusarium conidiospores to disperse via wind under controlled conditions in a wind tunnel study. Ten Fusarium species with diverse spore varieties were studied by placing them in the wind stream at wind velocities of 5 and 8 m s⁻¹ and collecting them after 6 m and a period of 1 h using a newly developed air sampling box. Although spore concentrations were high in the releasing Petri Dishes, the tested isolates were recaptured in only 18 of 78 runs. F. equiseti and F. cerealis were the most frequently recovered species. Changing abiotic conditions, wind speed, and spore shapes had no significant effect on Fusarium spore recapture rates. Another experiment showed that conidiospores were rarely released from the grown mycelium. Therefore, the importance of wind alone as a dispersal medium for Fusarium conidiospores may have been overestimated so far. Further studies should investigate the importance of carrier media or mobile linkers combined with the wind dispersal of spores.

To adapt to climate change, several agricultural strategies are currently being explored, including a shift in land use areas. Regional differences in microbiome composition and associated phytopathogens need to be considered. However, most empirical studies on differences in the crop microbiome focused on soil communities, with insufficient attention to the phyllosphere. In this study, we focused on wheat ears in three regions in northeastern Germany (Magdeburger Börde (MBB), Müncheberger Sander (MSA), Uckermärkisches Hügelland (UKH)) with different yield potentials, soil, and climatic conditions. To gain insight into the fungal community at different sites, we used a metabarcoding approach (ITS-NGS). Further, we examined the diversity and abundance of Fusarium and Alternaria using culture-dependent and culture-independent techniques. For each region, the prevalence of different orders rich in phytopathogenic fungi was determined: Sporidiobolales in MBB, Capnodiales and Pleosporales in MSA, and Hypocreales in UKH were identified as taxonomic biomarkers. Additionally, F. graminearum was found predominantly in UKH, whereas F. poae was more abundant in the other two regions. Environmental filters seem to be strong drivers of these differences, but we also discuss the possible effects of dispersal and interaction filters. Our results can guide shifting cultivation regions to be selected in the future concerning their phytopathogenic infection potential.