Rubina Sarki

Ms. Rubina Sarki


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 August 2020 in IEEE Access
Verified
Journal Article
Open access
RSRubina Sarki
Rubina Sarki
KAKhandakar Ahmed
Khandakar Ahmed
HWHua Wang
Hua Wang
YZYanchun Zhang
Yanchun Zhang
Diabetes Mellitus, or Diabetes, is a disease in which a person’s body fails to respond to insulin released by their pancreas, or it does not produce sufficient insulin. People suffering from diabetes are at high risk of developing various eye diseases over time. As a result of advances in machine learning techniques, early detection of diabetic eye disease using an automated system brings substantial benefits over manual detection. A variety of advanced studies relating to the detection of diabetic eye disease have recently been published. This paper presents a systematic survey of automated approaches to diabetic eye disease detection from several aspects, namely: i) available datasets, ii) image preprocessing techniques, iii) deep learning models and iv) performance evaluation metrics. The survey provides a comprehensive synopsis of diabetic eye disease detection approaches, including state of the art field approaches, which aim to provide valuable insight into research communities, healthcare professionals and patients with diabetes.

8 October 2020 in Health Information Science and Systems
Verified
Journal Article
Closed access
PDF file
RSRubina Sarki
Rubina Sarki
KAKhandakar Ahmed
Khandakar Ahmed
HWHua Wang
Hua Wang
YZYanchun Zhang
Yanchun Zhang

17 August 2021 in Data Science and Engineering
Verified
Journal Article
Open access
PDF file
RSRubina Sarki
Rubina Sarki
KAKhandakar Ahmed
Khandakar Ahmed
HWHua Wang
Hua Wang
YZYanchun Zhang
Yanchun Zhang
JMJiangang Ma
Jiangang Ma
KWKate Wang
Kate Wang
Diabetic eye disease (DED) is a cluster of eye problem that affects diabetic patients. Identifying DED is a crucial activity in retinal fundus images because early diagnosis and treatment can eventually minimize the risk of visual impairment. The retinal fundus image plays a significant role in early DED classification and identification. An accurate diagnostic model’s development using a retinal fundus image depends highly on image quality and quantity. This paper presents a methodical study on the significance of image processing for DED classification. The proposed automated classification framework for DED was achieved in several steps: image quality enhancement, image segmentation (region of interest), image augmentation (geometric transformation), and classification. The optimal results were obtained using traditional image processing methods with a new build convolution neural network (CNN) architecture. The new built CNN combined with the traditional image processing approach presented the best performance with accuracy for DED classification problems. The results of the experiments conducted showed adequate accuracy, specificity, and sensitivity.

13 July 2018 in ICST Transactions on Scalable Information Systems
Verified
Journal Article
Open access
PDF file
RSRubina Sarki
Rubina Sarki
KAKhandakar Ahmed
Khandakar Ahmed
HWHua Wang
Hua Wang
YZYanchun Zhang
Yanchun Zhang
KWKate Wang
Kate Wang

21 January 2022 in PLOS ONE
Verified
Journal Article
Open access
PDF file
RSRubina Sarki
Rubina Sarki
KAKhandakar Ahmed
Khandakar Ahmed
HWHua Wang
Hua Wang
YZYanchun Zhang
Yanchun Zhang
KWKate Wang
Kate Wang
The COVID-19 epidemic has a catastrophic impact on global well-being and public health. More than 27 million confirmed cases have been reported worldwide until now. Due to the growing number of confirmed cases, and challenges to the variations of the COVID-19, timely and accurate classification of healthy and infected patients is essential to control and treat COVID-19. We aim to develop a deep learning-based system for the persuasive classification and reliable detection of COVID-19 using chest radiography. Firstly, we evaluate the performance of various state-of-the-art convolutional neural networks (CNNs) proposed over recent years for medical image classification. Secondly, we develop and train CNN from scratch. In both cases, we use a public X-Ray dataset for training and validation purposes. For transfer learning, we obtain 100% accuracy for binary classification (i.e., Normal/COVID-19) and 87.50% accuracy for tertiary classification (Normal/COVID-19/Pneumonia). With the CNN trained from scratch, we achieve 93.75% accuracy for tertiary classification. In the case of transfer learning, the classification accuracy drops with the increased number of classes. The results are demonstrated by comprehensive receiver operating characteristics (ROC) and confusion metric analysis with 10-fold cross-validation.

9 September 2019 in bioRxiv
Verified
Preprint
Open access
PDF file
RSRubina Sarki
Rubina Sarki
SMSandra Michalska
Sandra Michalska
KAKhandakar Ahmed
Khandakar Ahmed
HWHua Wang
Hua Wang
YZYanchun Zhang
Yanchun Zhang
Currently, Diabetes and the associated Diabetic Retinopathy (DR) instances are increasing at an alarming rate. Numerous previous research has focused on automated DR detection from fundus photography. The classification of severe cases of pathological indications in the eye has achieved over 90% accuracy. Still, the mild cases are challenging to detect due to CNN inability to identify the subtle features, discrimnative of disease. The data used (i.e. annotated fundus photographies) was obtained from 2 publicly available sources – Messidor and Kaggle. The experiments were conducted with 13 Convolutional Neural Networks architectures, pre-trained on large-scale ImageNet database using the concept of Transfer Learning. Several performance improvement techniques were applied, such as: (i) fine-tuning, (ii) data augmentation, and (iii) volume increase. The results were measured against the standard Accuracy metric on the testing dataset. After the extensive experimentation, the maximum Accuracy of 86% on No DR/Mild DR classification task was obtained for ResNet50 model with fine-tuning (un-freeze and re-train the layers from 100 onwards), and RMSProp Optimiser trained on the combined Messidor + Kaggle (aug) datasets. Despite promising results, Deep learning continues to be an empirical approach that requires extensive experimentation in order to arrive at the most optimal solution. The comprehensive evaluation of numerous CNN architectures was conducted in order to facilitate an early DR detection. Furthermore, several performance improvement techniques were assessed to address the CNN limitation in subtle eye lesions identification. The model also included various levels of image quality (low/high resolution, under/over-exposure, out-of-focus etc.), in order to prove its robustness and ability to adapt to real-world conditions.