Background: When maize (Zea mays L.) is grown in the Northern hemisphere, its development is heavily arrested by chilling temperatures, especially at the juvenile phase. As some endophytes are beneficial for plants under stress conditions, we analyzed the impact of chilling temperatures on the root microbiome and examined whether microbiome-based analysis might help to identify bacterial strains that could promote growth under these temperatures. Results: We investigated how the maize root microbiome composition changed by means of 16S rRNA gene amplicon sequencing when maize was grown at chilling temperatures in comparison to ambient temperatures by repeatedly cultivating maize in field soil. We identified 12 abundant and enriched bacterial families that colonize maize roots, consisting of bacteria recruited from the soil, whereas seed-derived endophytes were lowly represented. Chilling temperatures modified the root microbiome composition only slightly, but significantly. An enrichment of several chilling-responsive families was detected, of which the Comamonadaceae and the Pseudomonadaceae were the most abundant in the root endosphere of maize grown under chilling conditions, whereas only three were strongly depleted, among which the Streptomycetaceae. Additionally, a collection of bacterial strains isolated from maize roots was established and a selection was screened for growth-promoting effects on juvenile maize grown under chilling temperatures. Two promising strains that promoted maize growth under chilling conditions were identified that belonged to the root endophytic bacterial families, from which the relative abundance remained unchanged by variations in the growth temperature. Conclusions: Our analyses indicate that chilling temperatures affect the bacterial community composition within the maize root endosphere. We further identified two bacterial strains that boost maize growth under chilling conditions. Their identity revealed that analyzing the chilling-responsive families did not help for their identification. As both strains belong to root endosphere enriched families, visualizing and comparing the bacterial diversity in these communities might still help to identify new PGPR strains. Additionally, a strain does not necessarely need to belong to a high abundant family in the root endosphere to provoke a growth-promoting effect in chilling conditions.

Biochar has previously been used in growing media blends as fertilizer or for improving plant growth, disease suppression, and as a sustainable replacement of peat. To achieve optimal circular horticulture, we propose here to reuse the biochar from spent growing media. However, it is unclear to what extent the biochar feedstock determines the mode of action of the biochar and if use of spent growing media biochar may encounter nutrient or salt problems. Differences in chemical characteristics, nutrient release, and interaction in a leaching experiment and effects on plant growth, nutrient uptake, and disease suppression in a strawberry greenhouse trial were studied for 11 biochars either processed from spent growing media or from lignocellulosic biomass. A well-studied biochar produced from oak wood was set as reference. Biochars produced from spent growing media were characterized by higher electrical conductivity, extractable and total nutrient concentrations compared with biochars produced from lignocellulosic biomass. Especially in the first phase of the leaching experiment, all biochars showed nutrient and salt release, with most prominent effects for spent growing media biochars and the reference biochar. The latter biochars were an important source of phosphorus and in particular of potassium. Only for the reference biochar, strawberry plants showed increased uptake of phosphorus, potassium and calcium, and increased chlorophyll concentration. No Bortrytis cinerea disease suppression and no increase in plant growth was observed for the tested biochars. It is concluded that spent growing media can be recycled as biochar in growing media without adverse effects compared to biochars produced from lignocellulosic biomass.

As wheat (Triticum aestivum) is an important staple food across the world, preservation of stable yields and increased productivity are major objectives in breeding programs. Drought is a global concern because its adverse impact is expected to be amplified in the future due to the current climate change. Here, we analyzed the effects of edaphic, environmental, and host factors on the wheat root microbiomes collected in soils from six regions in Belgium. Amplicon sequencing analysis of unplanted soil and wheat root endosphere samples indicated that the microbial community variations can be significantly explained by soil pH, microbial biomass, wheat genotype, and soil sodium and iron levels. Under drought stress, the biodiversity in the soil decreased significantly, but increased in the root endosphere community, where specific soil parameters seemingly determine the enrichment of bacterial groups. Indeed, we identified a cluster of drought-enriched bacteria that significantly correlated with soil compositions. Interestingly, integration of a functional analysis further revealed a strong correlation between the same cluster of bacteria and β-glucosidase and osmoprotectant proteins, two functions known to be involved in coping with drought stress. By means of this in silico analysis, we identified amplicon sequence variants (ASVs) that could potentially protect the plant from drought stress and validated them in planta. Yet, ASVs based on 16S rRNA sequencing data did not completely distinguish individual isolates because of their intrinsic short sequences. Our findings support the efforts to maintain stable crop yields under drought conditions through implementation of root microbiome analyses.