Michael Allen

Prof. Michael Allen

orcid

Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 February 2006 in Nature
Verified
Journal Article
Closed access
PDF file
DAD. W. Austin
D. W. Austin
MAMichael Allen
Michael Allen
JMJ. M. McCollum
J. M. McCollum
RDRoy D. Dar
Roy D. Dar
JWJ. R. Wilgus
J. R. Wilgus
MSM. L. Simpson
M. L. Simpson

24 June 2013 in PLOS ONE
Verified
Journal Article
Open access
PDF file
AMArturo C. Menchaca
Arturo C. Menchaca
DVDavid K. Visi
David K. Visi
OSOtto F. Strey
Otto F. Strey
PTPete D. Teel
Pete D. Teel
KKKevin Kalinowski
Kevin Kalinowski
PWPhillip C. Williamson
Phillip C. Williamson
The physiology of ticks supports a diverse community of non-pathogenic and pathogenic organisms. This study aims to initially characterize the microbial community present within colony-reared Amblyomma americanum using PCR of the variable region 5 of the 16S rRNA gene followed by semiconductor sequencing and classification of sequence data using the Ribosomal Database Project and MG-RAST analysis tools. Comparison of amplicon library datasets revealed changes in the microbiomes in newly engorged nymphs, newly-molted adults, and aged adults, as well as ticks exposed to different environmental conditions. These preliminary data support the concept that microbe survivorship and diversity are partially dependent upon environmental variables and the sequence of blood feeding, molting, and aging. The maintenance and/or emergence of pathogens in ticks may be dependent in part on temporal changes in the microbial community of the tick microbiome.

15 April 2004 in Environmental Microbiology
Verified
Journal Article
Closed access
PDF file
MAMichael Allen
Michael Allen
KWKaren T. Welch
Karen T. Welch
BPBenjamin S. Prebyl
Benjamin S. Prebyl
DBDavid C. Baker
David C. Baker
AMArthur J. Meyers
Arthur J. Meyers
GSGary S. Sayler
Gary S. Sayler

26 June 2018 in Environmental Science & Technology
Verified
Journal Article
Closed access
KNKristin M. Nielsen
Kristin M. Nielsen
YZYan Zhang
Yan Zhang
TCThomas E. Curran
Thomas E. Curran
Jason T. MagnusonJason T. Magnuson
Jason T. Magnuson
BVBarney J. Venables
Barney J. Venables
ARAaron P. Roberts
Aaron P. Roberts

21 September 2018 in Microbiologyopen
Verified
Journal Article
Open access
PDF file
STSantosh Thapa
Santosh Thapa
YZYan Zhang
Yan Zhang
MAMichael Allen
Michael Allen
Ixodes scapularis, the blacklegged deer tick, is the principal vector of Lyme disease in North America. Environmental factors are known to influence regional and seasonal incidence of Lyme disease and possibly the endemicity of the disease to the northeastern and upper mid‐western regions of the United States. With a goal to understand the impact of environmental temperature on microbial communities within the tick, we investigated the bacterial microbiome of colony‐reared I. scapularis ticks statically incubated at different temperatures (4, 20, 30, and 37°C) at a constant humidity in a controlled laboratory setting by comparison of sequenced amplicons of the bacterial 16S V4 rRNA gene to that of the untreated baseline controls. The microbiomes of colony‐reared I. scapularis males were distinct than that of females, which were entirely dominated by Rickettsia. In silico removal of Rickettsia sequences from female data revealed the underlying bacterial community, which is consistent in complexity with those seen among male ticks. The bacterial community composition of these ticks changes upon incubation at 30°C for a week and 37°C for more than 5 days. Moreover, the male ticks incubated at 30 and 37°C exhibited significantly different bacterial diversity compared to the initial baseline microbiome, and the change in bacterial diversity was dependent upon duration of exposure. Rickettsia‐free data revealed a significantly different bacterial diversity in female ticks incubated at 37°C compared to that of 4 and 20°C treatments. These results provide experimental evidence that environmental temperature can impact the tick bacterial microbiome in a laboratory setting.

17 May 2017 in PLOS ONE
Verified
Journal Article
Open access
PDF file
KDKatherine E Durrer
Katherine E Durrer
MAMichael Allen
Michael Allen
IHIone Hunt Von Herbing
Ione Hunt Von Herbing
Phenylketonuria (PKU) is a genetic disease characterized by the inability to convert dietary phenylalanine to tyrosine by phenylalanine hydroxylase. Given the importance of gut microbes in digestion, a genetically engineered microbe could potentially degrade some ingested phenylalanine from the diet prior to absorption. To test this, a phenylalanine lyase gene from Anabaena variabilis (AvPAL) was codon-optimized and cloned into a shuttle vector for expression in Lactobacillus reuteri 100-23C (pHENOMMenal). Functional expression of AvPAL was determined in vitro, and subsequently tested in vivo in homozygous PAHenu2 (PKU model) mice. Initial trials of two PAHenu2 homozygous (PKU) mice defined conditions for freeze-drying and delivery of bacteria. Animals showed reduced blood phe within three to four days of treatment with pHENOMMenal probiotic, and blood phe concentrations remained significantly reduced (P < 0.0005) compared to untreated controls during the course of experiments. Although pHENOMMenal probiotic could be cultured from fecal samples at four months post treatment, it could no longer be cultivated from feces at eight months post treatment, indicating eventual loss of the microbe from the gut. Preliminary screens during experimentation found no immune response to AvPAL. Collectively these studies provide data for the use of a genetically engineered probiotic as a potential treatment for PKU.