BASAK KANDEMİR

Dr. BASAK KANDEMİR


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 February 2021 in Journal of Personalized Medicine
Verified
Journal Article
Open access
PDF file
Melis Savasan SogutMelis Savasan Sogut
Melis Savasan Sogut
CVChitra Venugopal
Chitra Venugopal
BKBASAK KANDEMİR
BASAK KANDEMİR
UDUgur Dag
Ugur Dag
SMSujeivan Mahendram
Sujeivan Mahendram
IKIsil Kurnaz
Isil Kurnaz
Elk-1, a member of the ternary complex factors (TCFs) within the ETS (E26 transformation-specific) domain superfamily, is a transcription factor implicated in neuroprotection, neurodegeneration, and brain tumor proliferation. Except for known targets, c-fos and egr-1, few targets of Elk-1 have been identified. Interestingly, SMN, SOD1, and PSEN1 promoters were shown to be regulated by Elk-1. On the other hand, Elk-1 was shown to regulate the CD133 gene, which is highly expressed in brain-tumor-initiating cells (BTICs) and used as a marker for separating this cancer stem cell population. In this study, we have carried out microarray analysis in SH-SY5Y cells overexpressing Elk-1-VP16, which has revealed a large number of genes significantly regulated by Elk-1 that function in nervous system development, embryonic development, pluripotency, apoptosis, survival, and proliferation. Among these, we have shown that genes related to pluripotency, such as Sox2, Nanog, and Oct4, were indeed regulated by Elk-1, and in the context of brain tumors, we further showed that Elk-1 overexpression in CD133+ BTIC population results in the upregulation of these genes. When Elk-1 expression is silenced, the expression of these stemness genes is decreased. We propose that Elk-1 is a transcription factor upstream of these genes, regulating the self-renewal of CD133+ BTICs.

17 February 2021 in Journal of Personalized Medicine
Verified
Journal Article
Open access
PDF file
YBYigit Babal
Yigit Babal
BKBASAK KANDEMİR
BASAK KANDEMİR
IKIsil Kurnaz
Isil Kurnaz
The ETS domain family of transcription factors is involved in a number of biological processes, and is commonly misregulated in various forms of cancer. Using microarray datasets from patients with different grades of glioma, we have analyzed the expression profiles of various ETS genes, and have identified ETV1, ELK3, ETV4, ELF4, and ETV6 as novel biomarkers for the identification of different glioma grades. We have further analyzed the gene regulatory networks of ETS transcription factors and compared them to previous microarray studies, where Elk-1-VP16 or PEA3-VP16 were overexpressed in neuroblastoma cell lines, and we identify unique and common regulatory networks for these ETS proteins.

10 July 2025 in Communications Biology
Verified
Journal Article
Open access
PDF file
EHErin P. Harris
Erin P. Harris
BKBASAK KANDEMİR
BASAK KANDEMİR
SJStephanie M. Jones
Stephanie M. Jones
GAGeorgia M. Alexander
Georgia M. Alexander
JWJames M. Ward
James M. Ward
SDSerena M. Dudek
Serena M. Dudek
Hippocampal area CA2 has emerged as a functionally and molecularly distinct part of the hippocampus and is necessary for several types of social behavior including social aggression. As part of the unique molecular profile of both mouse and human CA2, the mineralocorticoid receptor (MR; Nr3c2) appears to play a critical role in controlling CA2 neuron cellular and synaptic properties. To better understand the fate (or state) of the neurons resulting from MR conditional knockout, we use a spatial transcriptomics approach. We find that without MRs, ‘CA2’ neurons acquire a CA1-like molecular phenotype. Additionally, we find that neurons in this area appear to have a cell size and density more like that in CA1. These findings support the idea that MRs control CA2’s ‘state’, at least during development, resulting in a CA1-like ‘fate’.

1 November 2020 in Neuroscience Letters
Verified
Journal Article
Closed access
BKBASAK KANDEMİR
BASAK KANDEMİR
SDSabrina Davis
Sabrina Davis
EYEsra Nur Yiğit
Esra Nur Yiğit
GÖGürkan Öztürk
Gürkan Öztürk
BYBayram Yılmaz
Bayram Yılmaz
IKIsil Kurnaz
Isil Kurnaz

13 September 2024 in Molecular Neurobiology
Verified
Journal Article
Closed access
PDF file
BKBASAK KANDEMİR
BASAK KANDEMİR
IKIsil Kurnaz
Isil Kurnaz

30 November 2024 in bioRxiv
Verified
Preprint
Open access
PDF file
EHErin P. Harris
Erin P. Harris
SJStephanie M. Jones
Stephanie M. Jones
GAGeorgia M. Alexander
Georgia M. Alexander
BKBASAK KANDEMİR
BASAK KANDEMİR
JWJames M Ward
James M Ward
SDSerena M. Dudek
Serena M. Dudek
Hippocampal area CA2 has emerged as a functionally and molecularly distinct part of the hippocampus and is necessary for several types of social behavior, including social aggression. As part of the unique molecular profile of both mouse and human CA2, the mineralocorticoid receptor (MR; Nr3c2 ) appears to play a critical role in controlling CA2 neuron cellular and synaptic properties. To better understand the fate (or state) of the neurons resulting from MR conditional knockout, we used a spatial transcriptomics approach. We found that without MRs, ‘CA2’ neurons acquire a CA1-like molecular phenotype. Additionally, we found that neurons in this area appear to have a cell size and density more like that in CA1. These finding support the idea that MRs control at least CA2’s ‘state’ during development, resulting in a CA1-like ‘fate’.