Although aerobic respiration is a hallmark of eukaryotes, a few unicellular lineages, growing in hypoxic environments, have secondarily lost this ability. In the absence of oxygen, the mitochondria of these organisms have lost all or parts of their genomes and evolved into mitochondria-related organelles (MROs). There has been debate regarding the presence of MROs in animals. Using deep sequencing approaches, we discovered that a member of the Cnidaria, the myxozoan Henneguya salminicola, has no mitochondrial genome, and thus has lost the ability to perform aerobic cellular respiration. This indicates that these core eukaryotic features are not ubiquitous among animals. Our analyses suggest that H. salminicola lost not only its mitochondrial genome but also nearly all nuclear genes involved in transcription and replication of the mitochondrial genome. In contrast, we identified many genes that encode proteins involved in other mitochondrial pathways and determined that genes involved in aerobic respiration or mitochondrial DNA replication were either absent or present only as pseudogenes. As a control, we used the same sequencing and annotation methods to show that a closely related myxozoan, Myxobolus squamalis , has a mitochondrial genome. The molecular results are supported by fluorescence micrographs, which show the presence of mitochondrial DNA in M. squamalis , but not in H. salminicola. Our discovery confirms that adaptation to an anaerobic environment is not unique to single-celled eukaryotes, but has also evolved in a multicellular, parasitic animal. Hence, H. salminicola provides an opportunity for understanding the evolutionary transition from an aerobic to an exclusive anaerobic metabolism.

Myxozoa is a speciose group of endoparasitic cnidarians that can cause severe ecological and economic effects. Although highly reduced compared to free-living cnidarians, myxozoans have retained the phylum-defining stinging organelles, known as cnidae or polar capsules, which are essential to initiating host infection. To explore the adaptations of myxozoan polar capsules, we compared the structure, firing process and content release mechanism of polar tubules in myxospores of three Myxobolus species including M. cerebralis, the causative agent of whirling disease. We found novel functions and morphologies in myxozoan polar tubules. High-speed video analysis of the firing process of capsules from the three Myxobolus species showed that all polar tubules rapidly extended and then contracted, an elasticity phenomenon that is unknown in free-living cnidarians. Interestingly, the duration of the tubule release differed among the three species by more than two orders of magnitude, ranging from 0.35 to 10 s. By dye-labeling the polar capsules prior to firing, we discovered that two of the species could release their entire capsule content, a delivery process not previously known from myxozoans. Having the role of content delivery and not simply anchoring suggests that cytotoxic or proteolytic compounds may be present in the capsule. Moreover, while free-living cnidarians inject most of the toxic content through the distal tip of the tubule, our video and ultrastructure analyses of the myxozoan tubules revealed patterns of double spirals of nodules and pores along parts of the tubules, and showed that the distal tip of the tubules was sealed. This helical pattern and distribution of openings may minimize the tubule mechanical weakness and improve resistance to the stress impose by firing. The finding that myxozoan tubule characteristics are very different from those of free-living cnidarians is suggestive of their adaptation to parasitic life. These findings show that myxozoan polar tubules have more functions than previously assumed, and provide insight into their evolution from free-living ancestors.

DNA cytosine methylation is central to many biological processes, including regulation of gene expression, cellular differentiation, and development. This DNA modification is conserved across animals, having been found in representatives of sponges, ctenophores, cnidarians, and bilaterians, and with very few known instances of secondary loss in animals. Myxozoans are a group of microscopic, obligate endoparasitic cnidarians that have lost many genes over the course of their evolution from free-living ancestors. Here, we investigated the evolution of the key enzymes involved in DNA cytosine methylation in 29 cnidarians and found that these enzymes were lost in an ancestor of Myxosporea (the most speciose class of Myxozoa). Additionally, using whole-genome bisulfite sequencing, we confirmed that the genomes of two distant species of myxosporeans, Ceratonova shasta and Henneguya salminicola, completely lack DNA cytosine methylation. Our results add a notable and novel taxonomic group, the Myxosporea, to the very short list of animal taxa lacking DNA cytosine methylation, further illuminating the complex evolutionary history of this epigenetic regulatory mechanism.

Myxosporea (Cnidaria: Myxozoa) are common fish parasites with complex life cycles that involve annelid hosts. Two economically important salmonid-infecting myxosporeans from rivers of the northwestern United States, Ceratonova shasta (Noble, 1950) and Parvicapsula minibicornis Kent et al., 1997, have life cycles that require a freshwater annelid host, identified previously as Manayunkia speciosa Leidy, 1859. This species was described originally from Pennsylvania, with subsequent records from New Jersey, the Great Lakes and west coast river basins. Despite apparent widespread distributions of both suitable fish hosts and the nominal annelid host, both parasites are restricted to river basins in the northwestern US and have never been recorded from the Great Lakes or the eastern US. In this study, we sampled 94 infected and uninfected annelids from two northwestern US rivers to confirm the identity of the host. We found these new specimens had mitochondrial COI sequences with no more than 4.5% distance from each other, but with at least 11% divergence from M. speciosa sampled from near the type locality (New Jersey) and Lake Superior. We did not recover any M. speciosa from either west coast river. The annelid from the Klamath and Willamette rivers showed marked sexual dimorphism that has not been reported in any Manayunkia described to date, though it is apparent that this had been missed in M. speciosa. Accordingly, we describe a new taxon, Manayunkia occidentalis sp. nov., and show that it can host both C. shasta and P. minibicornis. We suspect that previous records of Manayunkia from Pacific Northwest watersheds are likely to be M. occidentalis sp. nov. and not M. speciosa. Sampling of Manayunkia from additional localities is underway to test if the novel Manayunkia species is the only freshwater fabriciid annelid present across the Pacific Northwest.