Alexey Petukhov

Alexey Petukhov


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 February 2021 in Cancers
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ATAleksei Titov
Aleksei Titov
EZEkaterina Zmievskaya
Ekaterina Zmievskaya
IGIrina Ganeeva
Irina Ganeeva
AVAygul Valiullina
Aygul Valiullina
APAlexey Petukhov
Alexey Petukhov
Emil BulatovEmil Bulatov
Emil Bulatov
Adoptive cell immunotherapy (ACT) is a vibrant field of cancer treatment that began progressive development in the 1980s. One of the most prominent and promising examples is chimeric antigen receptor (CAR) T-cell immunotherapy for the treatment of B-cell hematologic malignancies. Despite success in the treatment of B-cell lymphomas and leukemia, CAR T-cell therapy remains mostly ineffective for solid tumors. This is due to several reasons, such as the heterogeneity of the cellular composition in solid tumors, the need for directed migration and penetration of CAR T-cells against the pressure gradient in the tumor stroma, and the immunosuppressive microenvironment. To substantially improve the clinical efficacy of ACT against solid tumors, researchers might need to look closer into recent developments in the other branches of adoptive immunotherapy, both traditional and innovative. In this review, we describe the variety of adoptive cell therapies beyond CAR T-cell technology, i.e., exploitation of alternative cell sources with a high therapeutic potential against solid tumors (e.g., CAR M-cells) or aiming to be universal allogeneic (e.g., CAR NK-cells, γδ T-cells), tumor-infiltrating lymphocytes (TILs), and transgenic T-cell receptor (TCR) T-cell immunotherapies. In addition, we discuss the strategies for selection and validation of neoantigens to achieve efficiency and safety. We provide an overview of non-conventional TCRs and CARs, and address the problem of mispairing between the cognate and transgenic TCRs. Finally, we summarize existing and emerging approaches for manufacturing of the therapeutic cell products in traditional, semi-automated and fully automated Point-of-Care (PoC) systems.

21 February 2022 in Cancers
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ATAleksei Titov
Aleksei Titov
YKYaroslav Kaminskiy
Yaroslav Kaminskiy
IGIrina Ganeeva
Irina Ganeeva
EZEkaterina Zmievskaya
Ekaterina Zmievskaya
AVAygul Valiullina
Aygul Valiullina
Emil BulatovEmil Bulatov
Emil Bulatov
Immunotherapy using chimeric antigen receptor (CAR) T cells is a promising option for cancer treatment. However, T cells and CAR-T cells frequently become dysfunctional in cancer, where numerous evasion mechanisms impair antitumor immunity. Cancer frequently exploits intrinsic T cell dysfunction mechanisms that evolved for the purpose of defending against autoimmunity. T cell exhaustion is the most studied type of T cell dysfunction. It is characterized by impaired proliferation and cytokine secretion and is often misdefined solely by the expression of the inhibitory receptors. Another type of dysfunction is T cell senescence, which occurs when T cells permanently arrest their cell cycle and proliferation while retaining cytotoxic capability. The first section of this review provides a broad overview of T cell dysfunctional states, including exhaustion and senescence; the second section is focused on the impact of T cell dysfunction on the CAR-T therapeutic potential. Finally, we discuss the recent efforts to mitigate CAR-T cell exhaustion, with an emphasis on epigenetic and transcriptional modulation.

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Alexander FoninAlexander Fonin
Alexander Fonin
SSSergey A. Silonov
Sergey A. Silonov
OSOlesya G. Shpironok
Olesya G. Shpironok
IAIuliia A. Antifeeva
Iuliia A. Antifeeva
APAlexey Petukhov
Alexey Petukhov
KTKonstantin K. Turoverov
Konstantin K. Turoverov
In this work, we put forward a hypothesis about the decisive role of multivalent nonspecific interactions in the early stages of PML body formation. Our analysis of the PML isoform sequences showed that some of the PML isoforms, primarily PML-II, are prone to phase separation due to their polyampholytic properties and the disordered structure of their C-terminal domains. The similarity of the charge properties of the C-terminal domains of PML-II and PML-VI isoforms made it possible for the first time to detect migration of PML-VI from PML bodies to the periphery of the cell nucleus, similar to the migration of PML-II isoforms. We found a population of “small” (area less than 1 µm2) spherical PML bodies with high dynamics of PML isoforms exchange with nucleoplasm and a low fraction of immobilized proteins, which indicates their liquid state properties. Such structures can act as “seeds” of functionally active PML bodies, providing the necessary concentration of PML isoforms for the formation of intermolecular disulfide bonds between PML monomers. FRAP analysis of larger bodies of toroidal topology showed the existence of an insoluble scaffold in their structure. The hypothesis about the role of nonspecific multiple weak interactions in the formation of PML bodies is further supported by the change in the composition of the scaffold proteins of PML bodies, but not their solidification, under conditions of induction of dimerization of PML isoforms under oxidative stress. Using the colocalization of ALT-associated PML bodies (APBs) with TRF1, we identified APBs and showed the difference in the dynamic properties of APBs and canonical PML bodies.

14 June 2019 in Algebras and Representation Theory
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APAlexey Petukhov
Alexey Petukhov
SSSusan J. Sierra
Susan J. Sierra
Let W+ be the positive Witt algebra, which has a \(\mathcal {C}\)-basis \(\{e_{n}: n \in \mathcal {Z}_{\geq 1}\}\), with Lie bracket [ei,ej] = (j − i)ei+j. We study the two-sided ideal structure of the universal enveloping algebra U(W+) of W+. We show that if I is a (two-sided) ideal of U(W+) generated by quadratic expressions in the ei, then U(W+)/I has finite Gelfand-Kirillov dimension, and that such ideals satisfy the ascending chain condition. We conjecture that analogous facts hold for arbitrary ideals of U(W+), and verify a version of these conjectures for radical Poisson ideals of the symmetric algebra S(W+).

8 April 2018 in Bulletin of the London Mathematical Society
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IPIvan Penkov
Ivan Penkov
APAlexey Petukhov
Alexey Petukhov

Verified
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Alexander FoninAlexander Fonin
Alexander Fonin
SSSergey A. Silonov
Sergey A. Silonov
AFAnna S. Fefilova
Anna S. Fefilova
OSOlesya Stepanenko
Olesya Stepanenko
AGAnastasiia Gavrilova
Anastasiia Gavrilova
KTKonstantin K. Turoverov
Konstantin K. Turoverov
In this work, we performed a comparative study of the formation of PML bodies by full-length PML isoforms and their C-terminal domains in the presence and absence of endogenous PML. Based on the analysis of the distribution of intrinsic disorder predisposition in the amino acid sequences of PML isoforms, regions starting from the amino acid residue 395 (i.e., sequences encoded by exons 4–6) were assigned as the C-terminal domains of these proteins. We demonstrate that each of the full-sized nuclear isoforms of PML is capable of forming nuclear liquid-droplet compartments in the absence of other PML isoforms. These droplets possess dynamic characteristics of the exchange with the nucleoplasm close to those observed in the wild-type cells. Only the C-terminal domains of the PML-II and PML-V isoforms are able to be included in the composition of the endogenous PML bodies, while being partially distributed in the nucleoplasm. The bodies formed by the C-terminal domain of the PML-II isoform are dynamic liquid droplet compartments, regardless of the presence or absence of endogenous PML. The C-terminal domain of PML-V forms dynamic liquid droplet compartments in the knockout cells (PML−/−), but when the C-terminus of the PML-V isoform is inserted into the existing endogenous PML bodies, the molecules of this protein cease to exchange with the nucleoplasm. It was demonstrated that the K490R substitution, which disrupts the PML sumoylation, promotes diffuse distribution of the C-terminal domains of PML-II and PML-V isoforms in endogenous PML knockout HeLa cells, but not in the wild-type cells. These data indicate the ability of the C-terminal domains of the PML-II and PML-V isoforms to form dynamic liquid droplet-like compartments, regardless of the ordered N-terminal RBCC motifs of the PML. This indicates a significant role of the non-specific interactions between the mostly disordered C-terminal domains of PML isoforms for the initiation of liquid–liquid phase separation (LLPS) leading to the formation of PML bodies.