Md Habibur Rahman

Dr. Md Habibur Rahman

Department of Computer Science and Engineering
orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 October 2023 in Informatics in Medicine Unlocked
Verified
Journal Article
Open access
MHMaruf Hossain
Maruf Hossain
SAShahin Ali
Shahin Ali
MAMahfuz Ahmed
Mahfuz Ahmed
RRRakibul Hasan Rakib
Rakibul Hasan Rakib
MKMoutushi Akter Kona
Moutushi Akter Kona
MRMd Habibur Rahman
Md Habibur Rahman

4 October 2022 in Computational Intelligence and Neuroscience
Verified
Journal Article
Open access
PDF file
SBSalliah Shafi Bhat
Salliah Shafi Bhat
VSVenkatesan Selvam
Venkatesan Selvam
GAGufran Ahmad Ansari
Gufran Ahmad Ansari
Mohd Dilshad AnsariMohd Dilshad Ansari
Mohd Dilshad Ansari
MRMd Habibur Rahman
Md Habibur Rahman
Diabetes is one of the biggest health problems that affect millions of people across the world. Uncontrolled diabetes can increase the risk of heart attack, cancer, kidney damage, blindness, and other illnesses. Researchers are motivated to create a Machine Learning methodology that can predict diabetes in the future. Exploiting Machine Learning Algorithms (MLA) is essential if healthcare professionals are able to identify diseases more effectively. In order to improve the medical diagnosis of diabetes this research explored and contrasts various MLA that can identify diabetes risk early. The research includes the analysis on real datasets such as a clinical dataset gathered from a doctor in the Indian district of Bandipora in the years April 2021–Feb2022. MLA are currently important in the healthcare sector due to their prediction abilities. Researchers are using MLA to improve disease prediction and reduce cost. In this Paper author developed a methodology using Machine Learning Algorithms for Diabetes Disease Risk Prediction in North Kashmir. Six MLA have been successfully used in the experimental study such as Random Forest (RF), Multi-Layer Perceptron (MLP), Support Vector Machine (SVM), Gradient Boost (GB), Decision Tree (DT), and Logistic Regression (LR). RF is the most accurate classifier with the uppermost accuracy rate of 98 percent followed by MLP (90.99%), SVM (92%), GBC (97%), DT (96%), and LR (69%), respectively, with the balanced data set. Lastly, this study enables us to effectively identify the prevalence and prediction of diabetes.

1 September 2020 in Genomics
Verified
Journal Article
Closed access
AMAl- Mustanjid
Al- Mustanjid
SMS M Hasan Mahmud
S M Hasan Mahmud
RRRejaul Islam Royel
Rejaul Islam Royel
MRMd Habibur Rahman
Md Habibur Rahman
TITania Islam
Tania Islam
MMMohammad Ali Moni
Mohammad Ali Moni

1 March 2022 in Informatics in Medicine Unlocked
Verified
Journal Article
Open access
MHMahmudul Hasan
Mahmudul Hasan
ZKZidan Khan
Zidan Khan
MCMohammed Salahuddin Chowdhury
Mohammed Salahuddin Chowdhury
AKArif Khan
Arif Khan
MMMohammad Ali Moni
Mohammad Ali Moni
MRMd Habibur Rahman
Md Habibur Rahman

MRMd Habibur Rahman
Md Habibur Rahman
SPSilong Peng
Silong Peng
XHXiyuan Hu
Xiyuan Hu
CCChen Chen
Chen Chen
MRMd. Rezanur Rahman
Md. Rezanur Rahman
MMMohammad Ali Moni
Mohammad Ali Moni
Neurological diseases (NDs) are progressive disorders, the progression of which can be significantly affected by a range of common diseases that present as comorbidities. Clinical studies, including epidemiological and neuropathological analyses, indicate that patients with type 2 diabetes (T2D) have worse progression of NDs, suggesting pathogenic links between NDs and T2D. However, finding causal or predisposing factors that link T2D and NDs remains challenging. To address these problems, we developed a high-throughput network-based quantitative pipeline using agnostic approaches to identify genes expressed abnormally in both T2D and NDs, to identify some of the shared molecular pathways that may underpin T2D and ND interaction. We employed gene expression transcriptomic datasets from control and disease-affected individuals and identified differentially expressed genes (DEGs) in tissues of patients with T2D and ND when compared to unaffected control individuals. One hundred and ninety seven DEGs (99 up-regulated and 98 down-regulated in affected individuals) that were common to both the T2D and the ND datasets were identified. Functional annotation of these identified DEGs revealed the involvement of significant cell signaling associated molecular pathways. The overlapping DEGs (i.e., seen in both T2D and ND datasets) were then used to extract the most significant GO terms. We performed validation of these results with gold benchmark databases and literature searching, which identified which genes and pathways had been previously linked to NDs or T2D and which are novel. Hub proteins in the pathways were identified (including DNM2, DNM1, MYH14, PACSIN2, TFRC, PDE4D, ENTPD1, PLK4, CDC20B, and CDC14A) using protein-protein interaction analysis which have not previously been described as playing a role in these diseases. To reveal the transcriptional and post-transcriptional regulators of the DEGs we used transcription factor (TF) interactions analysis and DEG-microRNAs (miRNAs) interaction analysis, respectively. We thus identified the following TFs as important in driving expression of our T2D/ND common genes: FOXC1, GATA2, FOXL1, YY1, E2F1, NFIC, NFYA, USF2, HINFP, MEF2A, SRF, NFKB1, USF2, HINFP, MEF2A, SRF, NFKB1, PDE4D, CREB1, SP1, HOXA5, SREBF1, TFAP2A, STAT3, POU2F2, TP53, PPARG, and JUN. MicroRNAs that affect expression of these genes include mir-335-5p, mir-16-5p, mir-93-5p, mir-17-5p, mir-124-3p. Thus, our transcriptomic data analysis identifies novel potential links between NDs and T2D pathologies that may underlie comorbidity interactions, links that may include potential targets for therapeutic intervention. In sum, our neighborhood-based benchmarking and multilayer network topology methods identified novel putative biomarkers that indicate how type 2 diabetes (T2D) and these neurological diseases interact and pathways that, in the future, may be targeted for treatment.

12 March 2021 in Briefings in Bioinformatics
Verified
Journal Article
Open access
PDF file
SMS M Hasan Mahmud
S M Hasan Mahmud
WCWenyu Chen
Wenyu Chen
YLYongsheng Liu
Yongsheng Liu
MAMd. Abdul Awal
Md. Abdul Awal
Kawsar AhmedKawsar Ahmed
Kawsar Ahmed
MMMohammad Ali Moni
Mohammad Ali Moni
Discovering drug–target (protein) interactions (DTIs) is of great significance for researching and developing novel drugs, having a tremendous advantage to pharmaceutical industries and patients. However, the prediction of DTIs using wet-lab experimental methods is generally expensive and time-consuming. Therefore, different machine learning-based methods have been developed for this purpose, but there are still substantial unknown interactions needed to discover. Furthermore, data imbalance and feature dimensionality problems are a critical challenge in drug-target datasets, which can decrease the classifier performances that have not been significantly addressed yet. This paper proposed a novel drug–target interaction prediction method called PreDTIs. First, the feature vectors of the protein sequence are extracted by the pseudo-position-specific scoring matrix (PsePSSM), dipeptide composition (DC) and pseudo amino acid composition (PseAAC); and the drug is encoded with MACCS substructure fingerings. Besides, we propose a FastUS algorithm to handle the class imbalance problem and also develop a MoIFS algorithm to remove the irrelevant and redundant features for getting the best optimal features. Finally, balanced and optimal features are provided to the LightGBM Classifier to identify DTIs, and the 5-fold CV validation test method was applied to evaluate the prediction ability of the proposed method. Prediction results indicate that the proposed model PreDTIs is significantly superior to other existing methods in predicting DTIs, and our model could be used to discover new drugs for unknown disorders or infections, such as for the coronavirus disease 2019 using existing drugs compounds and severe acute respiratory syndrome coronavirus 2 protein sequences.