Ziyu Li

Prof. Dr. Ziyu Li

Peking University Cancer Hospital & Institute

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 July 2021 in Molecular Cancer
Verified
Journal Article
Open access
PDF file
XTXiao-Huan Tang
Xiao-Huan Tang
TGTing Guo
Ting Guo
XGXiang-Yu Gao
Xiang-Yu Gao
XWXiao-Long Wu
Xiao-Long Wu
XXXiaofang Xing
Xiaofang Xing
ZLZiyu Li
Ziyu Li
Exosomes are a subpopulation of the tumour microenvironment (TME) that transmit various biological molecules to promote intercellular communication. Exosomes are derived from nearly all types of cells and exist in all body fluids. Noncoding RNAs (ncRNAs) are among the most abundant contents in exosomes, and some ncRNAs with biological functions are specifically packaged into exosomes. Recent studies have revealed that exosome-derived ncRNAs play crucial roles in the tumorigenesis, progression and drug resistance of gastric cancer (GC). In addition, regulating the expression levels of exosomal ncRNAs can promote or suppress GC progression. Moreover, the membrane structures of exosomes protect ncRNAs from degradation by enzymes and other chemical substances, significantly increasing the stability of exosomal ncRNAs. Specific hallmarks within exosomes that can be used for exosome identification, and specific contents can be used to determine their origin. Therefore, exosomal ncRNAs are suitable for use as diagnostic and prognostic biomarkers or therapeutic targets. Regulating the biogenesis of exosomes and the expression levels of exosomal ncRNAs may represent a new way to block or eradicate GC. In this review, we summarized the origins and characteristics of exosomes and analysed the association between exosomal ncRNAs and GC development.

22 January 2025 in Nature Medicine
Verified
Journal Article
Closed access
PDF file
SLShen Lin
Shen Lin
YZYanqiao Zhang
Yanqiao Zhang
ZLZiyu Li
Ziyu Li
XZXiaotian Zhang
Xiaotian Zhang
XGXiangyu Gao
Xiangyu Gao
JJJiafu Ji
Jiafu Ji

24 June 2020 in Science Translational Medicine
Verified
Journal Article
Closed access
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SYShenyi Yin
Shenyi Yin
RXRuibin Xi
Ruibin Xi
AWAiwen Wu
Aiwen Wu
SWShu Wang
Shu Wang
YLYingjie Li
Yingjie Li
JXJianzhong Xi
Jianzhong Xi
Patient-derived tumor-like cell clusters may be able to prospectively guide personalized therapeutic selection.

28 February 2020 in Science Advances
Verified
Journal Article
Open access
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ZLZiyu Li
Ziyu Li
XGXiangyu Gao
Xiangyu Gao
XPXinxin Peng
Xinxin Peng
MCMei-Ju May Chen
Mei-Ju May Chen
ZLZhe Li
Zhe Li
JJJiafu Ji
Jiafu Ji
Neoadjuvant chemotherapy is a common treatment for patients with gastric cancer. Although its benefits have been demonstrated, neoadjuvant chemotherapy is underutilized in gastric cancer management, because of the lack of biomarkers for patient selection and a limited understanding of resistance mechanisms. Here, we performed whole-genome, whole-exome, and RNA sequencing on 84 clinical samples (including matched pre- and posttreatment tumors) from 35 patients whose responses to neoadjuvant chemotherapy were rigorously defined. We observed increased microsatellite instability and mutation burden in nonresponse tumors. Through comparisons of response versus nonresponse tumors and pre- versus posttreatment samples, we found that C10orf71 mutations were associated with treatment resistance, which was supported by drug response data and potentially through inhibition of cell cycle, and that MYC amplification correlated with treatment sensitivity, whereas MDM2 amplification showed the opposite pattern. Neoadjuvant chemotherapy also reshapes tumor-immune signaling and microenvironment. Our study provides a critical basis for developing precision neoadjuvant regimens.

12 December 2022 in Molecular Cancer
Verified
Journal Article
Open access
PDF file
TGTING GUO
TING GUO
XTXiaohuan Tang
Xiaohuan Tang
XGXiang-Yu Gao
Xiang-Yu Gao
YZYuan Zhou
Yuan Zhou
BJBo Jin
Bo Jin
JJJiafu Ji
Jiafu Ji
At present, there is no validated marker to identify the subpopulation of patients with advanced gastric cancer (AGC) who might benefit from neoadjuvant chemotherapy (NACT). In view of this clinical challenge, the identification of non-invasive biomarkers for efficacy prediction of NACT in patients with AGC is imperative. Herein, we aimed to develop a non-invasive, liquid-biopsy-based assay by using an exosome-derived RNAs model based on multi-omics characteristics of RNAs. We firstly used a multi-omics strategy to characterize the mRNAs, microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) profiles of circulating exosome enriched fractions in responders to NACT paired with non-responders, using RNA sequencing. Finally, numerous miRNAs, mRNAs and lncRNAs were identified to be associated with the response to NACT in patients with AGC, and it was validated in an independent cohort with promising AUC values. Furthermore, we established a 6-exosome-RNA panel that could robustly identified responders from non-responders treated with fluorouracil-based neoadjuvant chemotherapy.

31 March 2022 in Journal for ImmunoTherapy of Cancer
Verified
Journal Article
Open access
PDF file
XXXiaofang Xing
Xiaofang Xing
JSJinyao Shi
Jinyao Shi
YJYongning Jia
Yongning Jia
YDYunsheng Dou
Yunsheng Dou
ZLZhongwu Li
Zhongwu Li
JJJiafu Ji
Jiafu Ji
Background: The combination of immune checkpoint blockade and chemotherapy has revolutionized the treatment of advanced gastric cancer (GC). It is crucial to unravel chemotherapy-induced tumor microenvironment (TME) modulation and identify which immunotherapy would improve antitumor effect. Methods: In this study, tumor-associated immune cells (TAICs) infiltration in residual tumor after neoadjuvant chemotherapy (NAC) together with 1075 cases of treatment-naïve GC patients was analyzed first. Then we performed multiplex fluorescence staining of a panel of immune markers (CD3, CD4, CD8, FOXP3 and PDL1) and T cell receptor β-chain sequencing to phenotype and enumerate T cell subpopulations and clonal expansion in paired GC samples (prechemotherapy and postchemotherapy) from another cohort of 30 cases of stage II/III GC patients. Results: Infiltration of CD68+ macrophages in residual tumors after NAC was significantly decreased compared with treatment-naïve GC patients, while no significant difference observed with respect to other immune markers. In residual tumors, post-NAC CD8 +T cells and CD68+ macrophages levels were significantly associated with chemotherapy response. Post-NAC CD8+ T cell levels remained as an independent predictor for favorable prognosis. Furthermore, when comparing the paired samples before and after NAC from 30 cases of stage II/III GC patients, we found FOXP3+ regulatory T cells proportion significantly decreased after chemotherapy. Pre-NAC FOXP3+ T reg cells level was much richer in the response group and decreased more significantly in the stromal compartment. CD8+ cytotoxic T lymphocytes levels were elevated after chemotherapy, which was more significant in the group treated with XELOX regimen and in patients with better response, consistent with the TCR diversity elevation. Conclusions: These findings have deepened our understanding of the immune modulating effect of chemotherapy and suggest that the immune profile of specimens after standard chemotherapy should be considered for the personalized immunotherapy to ultimately improve clinical outcome in patients with GC.