Šimon Bilík

Mr. Šimon Bilík

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
14 April 2021 in Sensors
Verified
Journal Article
Open access
PDF file
ŠBŠimon Bilík
Šimon Bilík
Lukas KratochvilaLukas Kratochvila
Lukas Kratochvila
ALAdam Ligocki
Adam Ligocki
OBOndrej Bostik
Ondrej Bostik
TZTomáš Zemčík
Tomáš Zemčík
LZLudek Zalud
Ludek Zalud
The Varroa destructor mite is one of the most dangerous Honey Bee (Apis mellifera) parasites worldwide and the bee colonies have to be regularly monitored in order to control its spread. In this paper we present an object detector based method for health state monitoring of bee colonies. This method has the potential for online measurement and processing. In our experiment, we compare the YOLO and SSD object detectors along with the Deep SVDD anomaly detector. Based on the custom dataset with 600 ground-truth images of healthy and infected bees in various scenes, the detectors reached the highest F1 score up to 0.874 in the infected bee detection and up to 0.714 in the detection of the Varroa destructor mite itself. The results demonstrate the potential of this approach, which will be later used in the real-time computer vision based honey bee inspection system. To the best of our knowledge, this study is the first one using object detectors for the Varroa destructor mite detection on a honey bee. We expect that performance of those object detectors will enable us to inspect the health status of the honey bee colonies in real time.

23 December 2023 in Computers and Electronics in Agriculture
Verified
Journal Article
Closed access
ŠBŠimon Bilík
Šimon Bilík
TZTomáš Zemčík
Tomáš Zemčík
Lukas KratochvilaLukas Kratochvila
Lukas Kratochvila
DRDominik Ricanek
Dominik Ricanek
MRMiloslav Richter
Miloslav Richter
KHKarel Horak
Karel Horak

12 April 2021 in Neural Computing and Applications
Verified
Journal Article
Closed access
PDF file
OBOndrej Bostik
Ondrej Bostik
KHKarel Horak
Karel Horak
Lukas KratochvilaLukas Kratochvila
Lukas Kratochvila
TZTomáš Zemčík
Tomáš Zemčík
ŠBŠimon Bilík
Šimon Bilík

13 September 2023 in Machine Vision and Applications
Verified
Journal Article
Open access
PDF file
ŠBŠimon Bilík
Šimon Bilík
DBDaniel Batrakhanov
Daniel Batrakhanov
TETuomas Eerola
Tuomas Eerola
LHLumi Haraguchi
Lumi Haraguchi
KKKaisa Kraft
Kaisa Kraft
KHKarel Horak
Karel Horak
Phytoplankton parasites are largely understudied microbial components with a potentially significant ecological influence on phytoplankton bloom dynamics. To better understand the impact of phytoplankton parasites, improved detection methods are needed to integrate phytoplankton parasite interactions into monitoring of aquatic ecosystems. Automated imaging devices commonly produce vast amounts of phytoplankton image data, but the occurrence of anomalous phytoplankton data in such datasets is rare. Thus, we propose an unsupervised anomaly detection system based on the similarity between the original and autoencoder-reconstructed samples. With this approach, we were able to reach an overall F1 score of 0.75 in nine phytoplankton species, which could be further improved by species-specific fine-tuning. The proposed unsupervised approach was further compared with the supervised Faster R-CNN-based object detector. Using this supervised approach and the model trained on plankton species and anomalies, we were able to reach a highest F1 score of 0.86. However, the unsupervised approach is expected to be more universal as it can also detect unknown anomalies and it does not require any annotated anomalous data that may not always be available in sufficient quantities. Although other studies have dealt with plankton anomaly detection in terms of non-plankton particles or air bubble detection, our paper is, according to our best knowledge, the first that focuses on automated anomaly detection considering putative phytoplankton parasites or infections.

5 December 2025
Verified
Preprint
Open access
Minh Duc LyMinh Duc Ly
Minh Duc Ly
MSMatej Sindelar
Matej Sindelar
KTKiet Vo Thanh
Kiet Vo Thanh
ŠBŠimon Bilík
Šimon Bilík
JSJakub Stefansky
Jakub Stefansky
Radek MartinekRadek Martinek
Radek Martinek
The classification of white blood cell images plays a vital role in hematologic diagnosis and disease monitoring. However, existing deep learning approaches still face challenges such as overlapping cells, inconsistent morphology, and variations in image quality due to lighting or staining inconsistencies, which limits robustness in clinical applications. To address these issues, this study proposes a novel hybrid deep learning framework, YOLO- GTNet, that integrates YOLOv11 for high-precision object detection, Graph Attention Networks for modeling spatial interactions, and a Transformer-based head for robust classification. The model is trained on the large-scale VSB - WBC dataset (16,027 images) and evaluated using accuracy and F1-score. The proposed method achieves an average accuracy of 98.46% and an F1-score of 98.44% across nine classes of WBC images, outperforming conventional models, including Convolutional Neural Networks, CheXNet, and Faster R-CNN, indicating robust performance across white blood cell image subtypes. To the best of our knowledge, this study is among the first to combine YOLOv11, Graph Attention Network, and a Transformer-based head for WBC classification, enhancing spatial reasoning and overall performance. The results demonstrate the potential of the proposed framework for integration into real-time clinical decision-support systems. Further clinical validation is encouraged to confirm its effectiveness in real-world diagnostics.

26 October 2022 in arXiv
Verified
Preprint
Open access
PDF file
ŠBŠimon Bilík
Šimon Bilík
KHKarel Horak
Karel Horak
In this paper, we suggest a way, how to use SIFT and SURF algorithms to extract the image features for anomaly detection. We use those feature vectors to train various classifiers on a real-world dataset in the semi -supervised (with a small number of faulty samples) manner with a large number of classifiers and in the one-class (with no faulty samples) manner using the SVDD and SVM classifier. We prove, that the SIFT and SURF algorithms could be used as feature extractors, that they could be used to train a semi-supervised and one-class classifier with an accuracy around 89\% and that the performance of the one-class classifier could be comparable to the semi-supervised one. We also made our dataset and source code publicly available.