Gianluca Paredi

Dr. Gianluca Paredi

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Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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BRBrenda Rosa
Brenda Rosa
MMMarialaura Marchetti
Marialaura Marchetti
GPGianluca Paredi
Gianluca Paredi
HAHeinz Amenitsch
Heinz Amenitsch
NFNina Franko
Nina Franko
Stefano BettatiStefano Bettati
Stefano Bettati
The formation of multienzymatic complexes allows for the fine tuning of many aspects of enzymatic functions, such as efficiency, localization, stability, and moonlighting. Here, we investigated, in solution, the structure of bacterial cysteine synthase (CS) complex. CS is formed by serine acetyltransferase (CysE) and O-acetylserine sulfhydrylase isozyme A (CysK), the enzymes that catalyze the last two steps of cysteine biosynthesis in bacteria. CysK and CysE have been proposed as potential targets for antibiotics, since cysteine and related metabolites are intimately linked to protection of bacterial cells against redox damage and to antibiotic resistance. We applied a combined approach of small-angle X-ray scattering (SAXS) spectroscopy and protein painting to obtain a model for the solution structure of CS. Protein painting allowed the identification of protein–protein interaction hotspots that were then used as constrains to model the CS quaternary assembly inside the SAXS envelope. We demonstrate that the active site entrance of CysK is involved in complex formation, as suggested by site-directed mutagenesis and functional studies. Furthermore, complex formation involves a conformational change in one CysK subunit that is likely transmitted through the dimer interface to the other subunit, with a regulatory effect. Finally, SAXS data indicate that only one active site of CysK is involved in direct interaction with CysE and unambiguously unveil the quaternary arrangement of CS.

29 January 2016 in Molecules
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Journal Article
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GPGianluca Paredi
Gianluca Paredi
SRSamanta Raboni
Samanta Raboni
FMFrancesco Marchesani
Francesco Marchesani
SOStella Α. Ordoudi
Stella Α. Ordoudi
Maria TsimidouMaria Tsimidou
Maria Tsimidou
Andrea MozzarelliAndrea Mozzarelli
Andrea Mozzarelli
Saffron is a spice comprised of the dried stigmas and styles of Crocus sativus L. flowers and, since it is very expensive, it is frequently adulterated. So far, proteomic tools have never been applied to characterize the proteome of saffron or identify possible cases of fraud. In this study, 1D-Gel Electrophoresis was carried out to characterize the protein profile of (i) fresh stigmas and styles of the plant; (ii) dried stigmas and styles from different geographical origins (Spanish, Italian, Greek and Iranian) that had been stored for various periods of time after their processing; and (iii) two common plant adulterants, dried petals of Carthamus tinctorius L. and dried fruits of Gardenia jasminoides Ellis. A selective protein extraction protocol was applied to avoid interference from colored saffron metabolites, such as crocins, during electrophoretic analyses of saffron. We succeeded in separating and assigning the molecular weights to more than 20 proteins. In spite of the unavailability of the genome of saffron, we were able to identify five proteins by Peptide Mass Fingerprinting: phosphoenolpyruvate carboxylase 3, heat shock cognate 70 KDa protein, crocetin glucosyltransferase 2, α-1,4-glucan-protein synthase and glyceraldehydes-3-phosphate dehydrogenase-2. Our findings indicate that (i) few bands are present in all saffron samples independently of origin and storage time, with amounts that significantly vary among samples and (ii) aging during saffron storage is associated with a reduction in the number of detectable bands, suggesting that proteases are still active. The protein pattern of saffron was quite distinct from those of two common adulterants, such as the dried petals of Carthamus tinctorius and the dried fruits of Gardenia jasminoides indicating that proteomic analyses could be exploited for detecting possible frauds.

1 November 2013
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Book Chapter
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GPGianluca Paredi
Gianluca Paredi
SRSamanta Raboni
Samanta Raboni
ADAdam Dowle
Adam Dowle
DADavid Ashford
David Ashford
JTJerry Thomas
Jerry Thomas
AMAndrea Mozzarelli
Andrea Mozzarelli
"The role of salt in dry cured ham processing characterized by LC-MS/MS-based proteomics" published on 01 Nov 2013 by Wageningen Academic.

1 November 2014
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Book Chapter
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GPGianluca Paredi
Gianluca Paredi
SRSamanta Raboni
Samanta Raboni
RVRoberta Virgili
Roberta Virgili
ASAlberto Sabbioni
Alberto Sabbioni
AMAndrea Mozzarelli
Andrea Mozzarelli
"Novelty and tradition: when proteomics meets Nero di Parma ham" published on 01 Nov 2014 by Wageningen Academic.

1 January 2013
Verified
Book Chapter
Closed access
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GPGianluca Paredi
Gianluca Paredi
SRSamanta Raboni
Samanta Raboni
ADAdam Dowle
Adam Dowle
DADavid Ashford
David Ashford
JTJerry Thomas
Jerry Thomas
AMAndrea Mozzarelli
Andrea Mozzarelli
Parma dry-cured ham is a typical Italian food product, manufactured according to a technological process based on empirical observations and traditional recipes, consisting of steps of salting,...