John Thomas

Dr. John Thomas

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Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 December 2022 in Annals of Neurology
Verified
Journal Article
Closed access
JTJohn Thomas
John Thomas
PKPhilippe Kahane
Philippe Kahane
CAChifaou Abdallah
Chifaou Abdallah
TATamir Avigdor
Tamir Avigdor
WZWillemiek J. E. M. Zweiphenning
Willemiek J. E. M. Zweiphenning
BFBirgit Frauscher
Birgit Frauscher

12 January 2023 in Sensors
Verified
Journal Article
Open access
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YRYUVARAJ RAJAMANICKAM
YUVARAJ RAJAMANICKAM
PTPrasanth Thagavel
Prasanth Thagavel
JTJohn Thomas
John Thomas
JFJack Sebastian Fogarty
Jack Sebastian Fogarty
FAFarhan Ali
Farhan Ali
Advances in signal processing and machine learning have expedited electroencephalogram (EEG)-based emotion recognition research, and numerous EEG signal features have been investigated to detect or characterize human emotions. However, most studies in this area have used relatively small monocentric data and focused on a limited range of EEG features, making it difficult to compare the utility of different sets of EEG features for emotion recognition. This study addressed that by comparing the classification accuracy (performance) of a comprehensive range of EEG feature sets for identifying emotional states, in terms of valence and arousal. The classification accuracy of five EEG feature sets were investigated, including statistical features, fractal dimension (FD), Hjorth parameters, higher order spectra (HOS), and those derived using wavelet analysis. Performance was evaluated using two classifier methods, support vector machine (SVM) and classification and regression tree (CART), across five independent and publicly available datasets linking EEG to emotional states: MAHNOB-HCI, DEAP, SEED, AMIGOS, and DREAMER. The FD-CART feature-classification method attained the best mean classification accuracy for valence (85.06%) and arousal (84.55%) across the five datasets. The stability of these findings across the five different datasets also indicate that FD features derived from EEG data are reliable for emotion recognition. The results may lead to the possible development of an online feature extraction framework, thereby enabling the development of an EEG-based emotion recognition system in real time.

1 November 2020 in Journal of Neuroscience Methods
Verified
Journal Article
Closed access
JRJac Fredo Agastinose Ronicko
Jac Fredo Agastinose Ronicko
JTJohn Thomas
John Thomas
PTPrasanth Thangavel
Prasanth Thangavel
VKVineetha Koneru
Vineetha Koneru
GLGeorg Langs
Georg Langs
JDJustin Dauwels
Justin Dauwels

1 July 2018
Verified
Conference Paper
Closed access
JTJohn Thomas
John Thomas
LCLuca Comoretto
Luca Comoretto
JJJing Jin
Jing Jin
JDJustin Dauwels
Justin Dauwels
SCSydney S. Cash
Sydney S. Cash
MWM. Brandon Westover
M. Brandon Westover
Diagnosis of epilepsy based on visual inspection of electroencephalogram (EEG) abnormalities is an inefficient, time-consuming, and expert-centered process. Moreover, the diagnosis based on ictal epileptiform events is challenging as the ictal patterns are infrequent. Consequently, the development of an automated, fast, and reliable epileptic EEG diagnostic system is essential. The interictal epileptiform discharges (IEDs) are recurring patterns that are highly suggestive of epilepsy. In this paper, we propose an epileptic EEG classification system based on IED detection. The proposed system comprises of three modules: pre-processing, waveform-level classification, and EEG-level classification. We employ a Convolutional Neural Network (CNN) for waveform-level classification and a Support Vector Machine (SVM) for EEG-level classification. We evaluated the proposed system on a dataset of 156 EEGs recorded at Massachusetts General Hospital (MGH), Boston. The system achieved a mean 4-fold classification accuracy of 83.86% for classifying EEGs with and without IEDs.

3 August 2024 in Epilepsia
Verified
Journal Article
Open access
JTJohn Thomas
John Thomas
CAChifaou Abdallah
Chifaou Abdallah
ZCZhengchen Cai
Zhengchen Cai
KJKassem Jaber
Kassem Jaber
JGJean Gotman
Jean Gotman
BFBirgit Frauscher
Birgit Frauscher
Objective: Stereoelectroencephalography (SEEG) is increasingly utilized worldwide in epilepsy surgery planning. International guidelines for SEEG terminology and interpretation are yet to be proposed. There are worldwide differences in SEEG definitions, application of features in epilepsy surgery planning, and interpretation of surgical outcomes. This hinders the clinical interpretation of SEEG findings and collaborative research. We aimed to assess the global perspectives on SEEG terminology, differences in the application of presurgical features, and variability in the interpretation of surgery outcome scores, and analyze how clinical expert demographics influenced these opinions.Methods: We assessed the practices and opinions of epileptologists with specialized training in SEEG using a survey. Data were qualitatively analyzed, and subgroups were examined based on geographical regions and years of experience. Primary outcomes included opinions on SEEG terminology, features used for epilepsy surgery, and interpretation of outcome scores. Additionally, we conducted a multilevel regression and poststratification analysis to characterize the nonresponders.Results: A total of 321 expert responses from 39 countries were analyzed. We observed substantial differences in terminology, practices, and use of presurgical features across geographical regions and SEEG expertise levels. The majority of experts (220, 68.5%) favored the Lüders epileptogenic zone definition. Experts were divided regarding the seizure onset zone definition, with 179 (55.8%) favoring onset alone and 135 (42.1%) supporting onset and early propagation. In terms of presurgical SEEG features, a clear preference was found for ictal features over interictal features. Seizure onset patterns were identified as the most important features by 265 experts (82.5%). We found similar trends after correcting for nonresponders using regression analysis.Significance: This study underscores the need for standardized terminology, interpretation, and outcome assessment in SEEG‐informed epilepsy surgery. By highlighting the diverse perspectives and practices in SEEG, this research lays a solid foundation for developing globally accepted terminology and guidelines, advancing the field toward improved communication and standardization in epilepsy surgery.

30 September 2023 in Epilepsia
Verified
Journal Article
Open access
AHAlyssa Ho
Alyssa Ho
SHSana Hannan
Sana Hannan
JTJohn Thomas
John Thomas
TATamir Avigdor
Tamir Avigdor
CAChifaou Abdallah
Chifaou Abdallah
BFBirgit Frauscher
Birgit Frauscher
Objective: Rapid eye movement (REM) sleep reduces the rate and extent of interictal epileptiform discharges (IEDs). Breakthrough epileptic activity during REM sleep is therefore thought to best localize the seizure onset zone (SOZ). We utilized polysomnography combined with direct cortical recordings to investigate the influences of anatomical locations and the time of night on the suppressive effect of REM sleep on IEDs.Methods: Forty consecutive patients with drug‐resistant focal epilepsy underwent combined polysomnography and stereo‐electroencephalography during presurgical evaluation. Ten‐minute interictal epochs were selected 2 h prior to sleep onset (wakefulness), and from the first and second half of the night during non‐REM (NREM) sleep and REM sleep. IEDs were detected automatically across all channels. Anatomic localization, time of night, and channel type (within or outside the SOZ) were tested as modulating factors.Results: Relative to wakefulness, there was a suppression of IEDs by REM sleep in neocortical regions (median = −27.6%), whereas mesiotemporal regions showed an increase in IEDs (19.1%, p = .01, d = .39). This effect was reversed when comparing the regional suppression of IEDs by REM sleep relative to NREM sleep (−35.1% in neocortical, −58.7% in mesiotemporal, p < .001, d = .39). Across all patients, no clinically relevant novel IED regions were observed in REM sleep versus NREM or wakefulness based on our predetermined thresholds (4 IEDs/min in REM, 0 IEDs/min in NREM and wakefulness). Finally, there was a reduction in IEDs in late (NREM: 1.08/min, REM: .61/min) compared to early sleep (NREM: 1.22/min, REM: .69/min) for both NREM (p < .001, d = .21) and REM (p = .04, d = .14).Significance: Our results demonstrate a spatiotemporal effect of IED suppression by REM sleep relative to wakefulness in neocortical but not mesiotemporal regions, and in late versus early sleep. This suggests the importance of considering sleep stage interactions and the potential influences of anatomical locations when using IEDs to define the epileptic focus.