Shashi Thutupalli

Dr. Shashi Thutupalli


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 June 2013 in Proceedings of the National Academy of Sciences
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EMErik Andreas Martens
Erik Andreas Martens
STShashi Thutupalli
Shashi Thutupalli
AFAntoine Fourrière
Antoine Fourrière
OHOskar Hallatschek
Oskar Hallatschek
The synchronization of coupled oscillators is a fascinating manifestation of self-organization that nature uses to orchestrate essential processes of life, such as the beating of the heart. Although it was long thought that synchrony and disorder were mutually exclusive steady states for a network of identical oscillators, numerous theoretical studies in recent years have revealed the intriguing possibility of “chimera states,” in which the symmetry of the oscillator population is broken into a synchronous part and an asynchronous part. However, a striking lack of empirical evidence raises the question of whether chimeras are indeed characteristic of natural systems. This calls for a palpable realization of chimera states without any fine-tuning, from which physical mechanisms underlying their emergence can be uncovered. Here, we devise a simple experiment with mechanical oscillators coupled in a hierarchical network to show that chimeras emerge naturally from a competition between two antagonistic synchronization patterns. We identify a wide spectrum of complex states, encompassing and extending the set of previously described chimeras. Our mathematical model shows that the self-organization observed in our experiments is controlled by elementary dynamical equations from mechanics that are ubiquitous in many natural and technological systems. The symmetry-breaking mechanism revealed by our experiments may thus be prevalent in systems exhibiting collective behavior, such as power grids, optomechanical crystals, or cells communicating via quorum sensing in microbial populations.

1 July 2011 in New Journal of Physics
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STShashi Thutupalli
Shashi Thutupalli
RSRalf Seemann
Ralf Seemann
SHStephan Herminghaus
Stephan Herminghaus

30 May 2014 in Soft Matter
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SHStephan Herminghaus
Stephan Herminghaus
CMCorinna C. Maass
Corinna C. Maass
CKCarsten Krüger
Carsten Krüger
STShashi Thutupalli
Shashi Thutupalli
LGLucas Goehring
Lucas Goehring
CBChristian Bahr
Christian Bahr
Active emulsions, i.e. , emulsions whose droplets perform self-propelled motion, are of tremendous interest for mimicking collective phenomena in biological populations such as phytoplankton and bacterial colonies, but also for experimentally studying rheology, pattern formation, and phase transitions in systems far from thermal equilibrium.

7 May 2018 in Proceedings of the National Academy of Sciences
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STShashi Thutupalli
Shashi Thutupalli
DGDelphine Geyer
Delphine Geyer
RSRajesh Singh
Rajesh Singh
RARonojoy Adhikari
Ronojoy Adhikari
HSHoward A. Stone
Howard A. Stone
Significance: Active particle suspensions comprise energy-consuming and hydrodynamically interacting units, such as swimming microorganisms, autophoretic colloids, and active droplets. Though it is now recognized that emergent self-organization in such systems is driven by their spontaneous hydrodynamic flow, it is still not well-understood how the modification of this flow by confining boundaries impacts self-organization. Here we combine experiments, theory, and simulations to elucidate the effect of boundaries on the spontaneous flow in a suspension of active emulsion droplets. Our results establish a widely applicable paradigm for flow-induced phase separation in active fluids and offer routes to manipulating their microstructure.

17 June 2021 in Proceedings of the National Academy of Sciences
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XYXingbo Yang
Xingbo Yang
MHMatthias Heinemann
Matthias Heinemann
JHJonathon Howard
Jonathon Howard
GHGreg Huber
Greg Huber
SISrividya Iyer-Biswas
Srividya Iyer-Biswas
PFPeter J. Foster
Peter J. Foster
Cells are the basic units of all living matter which harness the flow of energy to drive the processes of life. While the biochemical networks involved in energy transduction are well-characterized, the energetic costs and constraints for specific cellular processes remain largely unknown. In particular, what are the energy budgets of cells? What are the constraints and limits energy flows impose on cellular processes? Do cells operate near these limits, and if so how do energetic constraints impact cellular functions? Physics has provided many tools to study nonequilibrium systems and to define physical limits, but applying these tools to cell biology remains a challenge. Physical bioenergetics, which resides at the interface of nonequilibrium physics, energy metabolism, and cell biology, seeks to understand how much energy cells are using, how they partition this energy between different cellular processes, and the associated energetic constraints. Here we review recent advances and discuss open questions and challenges in physical bioenergetics.

5 June 2011 in Nature Structural & Molecular Biology
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Geert van den BogaartGeert van den Bogaart
Geert van den Bogaart
STShashi Thutupalli
Shashi Thutupalli
JRJelger H Risselada
Jelger H Risselada
KMKarsten Meyenberg
Karsten Meyenberg
Matthew HoltMatthew Holt
Matthew Holt
RJReinhard Jahn
Reinhard Jahn
Synaptotagmin-1 is known to accelerate membrane fusion during neuronal exocytosis in response to Ca2+, but how it does this is unclear. By probing the activity of synaptotagmin-1 under conditions of low ionic strength, it is now shown that SNARE-mediated fusion is dependent on synaptotagmin-1, which tethers liposomes together but at distances too far for fusion. Ca2+ then induces synaptotagmin-1 to bring the liposomes closer together, allowing fusion to proceed. Synaptotagmin-1 triggers Ca2+-sensitive, rapid neurotransmitter release by promoting interactions between SNARE proteins on synaptic vesicles and the plasma membrane. How synaptotagmin-1 promotes this interaction is unclear, and the massive increase in membrane fusion efficiency of Ca2+-bound synaptotagmin-1 has not been reproduced in vitro. However, previous experiments have been performed at relatively high salt concentrations, screening potentially important electrostatic interactions. Using functional reconstitution in liposomes, we show here that at low ionic strength SNARE-mediated membrane fusion becomes strictly dependent on both Ca2+ and synaptotagmin-1. Under these conditions, synaptotagmin-1 functions as a distance regulator that tethers the liposomes too far from the plasma membrane for SNARE nucleation in the absence of Ca2+, but while bringing the liposomes close enough for membrane fusion in the presence of Ca2+. These results may explain how the relatively weak electrostatic interactions between synaptotagmin-1 and membranes substantially accelerate fusion.