Sonia Rocha

Prof. Sonia Rocha

University of Liverpool
+1
orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 May 2008 in Biochemical Journal
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Journal Article
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PUPatrick van Uden
Patrick van Uden
NKNiall Kenneth
Niall Kenneth
Sonia RochaSonia Rocha
Sonia Rocha
HIF (hypoxia-inducible factor) is the main transcription factor activated by low oxygen tensions. HIF-1α (and other α subunits) is tightly controlled mostly at the protein level, through the concerted action of a class of enzymes called PHDs (prolyl hydroxylases) 1, 2 and 3. Most of the knowledge of HIF derives from studies following hypoxic stress; however, HIF-1α stabilization is also found in non-hypoxic conditions through an unknown mechanism. In the present study, we demonstrate that NF-κB (nuclear factor κB) is a direct modulator of HIF-1α expression. The HIF-1α promoter is responsive to selective NF-κB subunits. siRNA (small interfering RNA) studies for individual NF-κB members revealed differential effects on HIF-1α mRNA levels, indicating that NF-κB can regulate basal HIF-1α expression. Finally, when endogenous NF-κB is induced by TNFα (tumour necrosis factor α) treatment, HIF-1α levels also change in an NF-κB-dependent manner. In conclusion, we find that NF-κB can regulate basal TNFα and, in certain circumstances, the hypoxia-induced HIF-1α.

28 August 2011 in Nature Cell Biology
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Journal Article
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CMClaudio Mauro
Claudio Mauro
SLShi Chi Leow
Shi Chi Leow
EAElena Anso
Elena Anso
Sonia RochaSonia Rocha
Sonia Rocha
ATAnil K. Thotakura
Anil K. Thotakura
GFGuido Franzoso
Guido Franzoso

15 March 2019 in Science
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Journal Article
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MBMichael Batie
Michael Batie
JFJulianty Frost
Julianty Frost
Mark FrostMark Frost
Mark Frost
JWJames W. Wilson
James W. Wilson
PSPieta Schofield
Pieta Schofield
Sonia RochaSonia Rocha
Sonia Rocha
Oxygen sensing revisited: The cellular response to hypoxia (oxygen deficiency) is a contributing factor in many human diseases. Previous studies examining the way in which hypoxia alters gene expression have focused on oxygen-sensing enzymes that regulate the activity of a transcription factor called hypoxia-inducible factor (see the Perspective by Gallipoli and Huntly). Chakraborty et al. and Batie et al. now show that hypoxia can also affect gene expression through direct effects on chromatin regulators. Certain histone demethylases, such as KDM6A and KDM5A, were found to be direct sensors of oxygen. In cell-culture models, hypoxia diminished the activity of these enzymes and caused changes in the expression of genes that govern cell fate. Science , this issue p. 1217 , p. 1222 ; see also p. 1148

24 November 2015 in The FEBS Journal
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Journal Article
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LDLaura D'Ignazio
Laura D'Ignazio
DBDaniel Bandarra
Daniel Bandarra
Sonia RochaSonia Rocha
Sonia Rocha
Hypoxia and inflammation have been associated with a number of pathological conditions, in particular inflammatory diseases. While hypoxia is mainly associated with the activation of hypoxia‐inducible factors (HIFs), inflammation activates the family of transcription factor called nuclear factor‐kappa B (NF‐κB). An extensive crosstalk between these two main molecular players involved in hypoxia and inflammation has been demonstrated. This crosstalk includes common activating stimuli, shared regulators and targets. In this review, we discuss the current understanding of the role of NF‐κB and HIF in the context of the immune response. We review the crosstalk between HIF and NF‐κB in the control of the immune response in different immune cell types including macrophages, neutrophils and B and T cells. Furthermore the importance of the molecular crosstalk between HIFs and NF‐κB for a variety of medical conditions will be discussed.

1 March 2004 in Molecular Cell
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Journal Article
Closed access
KCKirsteen Campbell
Kirsteen Campbell
Sonia RochaSonia Rocha
Sonia Rocha
NPNeil D Perkins
Neil D Perkins

4 November 2016 in Nature Communications
Verified
Journal Article
Open access
JFJulianty Frost
Julianty Frost
CGCarles Galdeano
Carles Galdeano
PSPedro Soares
Pedro Soares
MGMorgan S. Gadd
Morgan S. Gadd
KGKatarzyna M. Grzes
Katarzyna M. Grzes
ACAlessio Ciulli
Alessio Ciulli
Chemical strategies to using small molecules to stimulate hypoxia inducible factors (HIFs) activity and trigger a hypoxic response under normoxic conditions, such as iron chelators and inhibitors of prolyl hydroxylase domain (PHD) enzymes, have broad-spectrum activities and off-target effects. Here we disclose VH298, a potent VHL inhibitor that stabilizes HIF-α and elicits a hypoxic response via a different mechanism, that is the blockade of the VHL:HIF-α protein–protein interaction downstream of HIF-α hydroxylation by PHD enzymes. We show that VH298 engages with high affinity and specificity with VHL as its only major cellular target, leading to selective on-target accumulation of hydroxylated HIF-α in a concentration- and time-dependent fashion in different cell lines, with subsequent upregulation of HIF-target genes at both mRNA and protein levels. VH298 represents a high-quality chemical probe of the HIF signalling cascade and an attractive starting point to the development of potential new therapeutics targeting hypoxia signalling.